RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RIIAD1A6NNX1 92 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 MCIDASD6RGH6 385 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 PRR23D1E9PI22 279 aaPredicted RBP18.86■□□□□ 0.61
VPS28-209ENST00000528142 ZNF806P0C7X5 589 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 PRR23D2P0DMB1 279 aaPredicted RBP18.86■□□□□ 0.61
VPS28-209ENST00000528142 CD59P13987 128 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 NAGAP17050 411 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 ITPKBP27987 946 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 SOX3P41225 446 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 ENTPD1P49961 510 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 P2RX1P51575 399 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 WNT4P56705 351 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 FBXW4P57775 412 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 CRMP1Q14194 572 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 SOWAHCQ53LP3 525 aaPredicted RBP18.86■□□□□ 0.61
VPS28-209ENST00000528142 NUP54Q7Z3B4 507 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 OTULINQ96BN8 352 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 ZHX1-C8orf76Q96EF9 292 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 OSGIN1Q9UJX0 560 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 PMF1-BGLAPU3KQ54 211 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 CCDC182A6NF36 153 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 KLF7O75840 302 aaPredicted RBP18.86■□□□□ 0.61
VPS28-209ENST00000528142 ZFAND5O76080 213 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 UMODP07911 640 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 PGCP20142 388 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 SLC2A5P22732 501 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 MOGQ16653 247 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 OR2G6Q5TZ20 316 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 DPY19L2P2Q6ZN68 376 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 ZBTB46Q86UZ6 589 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 RNF138Q8WVD3 245 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 NACC2Q96BF6 587 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 ERMAPQ96PL5 475 aaPredicted RBP18.86■□□□□ 0.61
VPS28-209ENST00000528142 CMKLR1Q99788 373 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 CENPOQ9BU64 300 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 DCSTAMPQ9H295 470 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 MMP25Q9NPA2 562 aa18.86■□□□□ 0.61
VPS28-209ENST00000528142 COL27A1Q8IZC6 1860 aaPredicted RBP18.85■□□□□ 0.61
VPS28-209ENST00000528142 GMFGO60234 142 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 ZNF3P17036 446 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 NOS3P29474 1203 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 LTBQ06643 244 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 SPEM2Q0P670 501 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 TMED1Q13445 227 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 CBFBQ13951 182 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 PCOLCEQ15113 449 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 DGUOKQ16854 277 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 TIMM50Q3ZCQ8 353 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 ARMC4Q5T2S8 1044 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 LYPD8Q6UX82 237 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 B3GLCTQ6Y288 498 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 IGFN1Q86VF2 1251 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 MISPQ8IVT2 679 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 SIRT6Q8N6T7 355 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 GPR119Q8TDV5 335 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 DUSP19Q8WTR2 217 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 MOGAT1Q96PD6 335 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 GPX7Q96SL4 187 aaPredicted RBP18.85■□□□□ 0.61
VPS28-209ENST00000528142 CHCHD6Q9BRQ6 235 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 PARD6AQ9NPB6 346 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 ISYNA1Q9NPH2 558 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 NRIP3Q9NQ35 241 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 FAM86C1Q9NVL1 165 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 TNFRSF10DQ9UBN6 386 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 IER3IP1Q9Y5U9 82 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 OTOGLQ3ZCN5 2332 aa18.85■□□□□ 0.61
VPS28-209ENST00000528142 LOC100506127A0A0U1RQW1 187 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 TEX51A0A1B0GUA7 166 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 ZC3H12DA2A288 527 aaKnown RBP18.84■□□□□ 0.61
VPS28-209ENST00000528142 ARPC3O15145 178 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 CDC40O60508 579 aaKnown RBP eCLIP18.84■□□□□ 0.61
VPS28-209ENST00000528142 GPX5O75715 221 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 WISP1O95388 367 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 PRPS1P60891 318 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 TUBA1BP68363 451 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 USP43Q70EL4 1123 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 TUBA1AQ71U36 451 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 LHFPL3Q86UP9 236 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 PHC2Q8IXK0 858 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 PSD4Q8NDX1 1056 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 B4GALNT2Q8NHY0 566 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 TM9SF4Q92544 642 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 KTI12Q96EK9 354 aaPredicted RBP18.84■□□□□ 0.61
VPS28-209ENST00000528142 TEAD3Q99594 435 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 SLIRPQ9GZT3 109 aaKnown RBP18.84■□□□□ 0.61
VPS28-209ENST00000528142 RNF167Q9H6Y7 350 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 NDUFB11Q9NX14 153 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 MYOTQ9UBF9 498 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 HIF3AQ9Y2N7 669 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 IFNGP01579 166 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 ASAH2BP0C7U1 165 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 GP1BBP13224 206 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 HIST1H1CP16403 213 aaKnown RBP18.84■□□□□ 0.61
VPS28-209ENST00000528142 CPEP16870 476 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 CD79BP40259 229 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 DBPQ10586 325 aaPredicted RBP18.84■□□□□ 0.61
VPS28-209ENST00000528142 DCTN2Q13561 401 aaKnown RBP18.84■□□□□ 0.61
VPS28-209ENST00000528142 ISXQ2M1V0 245 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 GXYLT1Q4G148 440 aa18.84■□□□□ 0.61
VPS28-209ENST00000528142 LRRC75AQ8NAA5 344 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms