RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CHERPQ8IWX8 916 aaKnown RBP9.03□□□□□ -0.96
NUP54-203ENST00000504173 UBQLNLQ8IYU4 475 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 LILRA2Q8N149 483 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 MEIOBQ8N635 442 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 FAM86B1Q8N7N1 296 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 LSMEM1Q8N8F7 131 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 OR5M9Q8NGP3 310 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 FAM57AQ8TBR7 257 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 ADAMTS16Q8TE57 1224 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 PHF10Q8WUB8 498 aaKnown RBP9.03□□□□□ -0.96
NUP54-203ENST00000504173 DNAJA4Q8WW22 397 aaPredicted RBP9.03□□□□□ -0.96
NUP54-203ENST00000504173 RELTQ969Z4 430 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 C3orf49Q96BT1 292 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 SLC47A1Q96FL8 570 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 AMBRA1Q9C0C7 1298 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 ADAM19Q9H013 955 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 CHST11Q9NPF2 352 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 ALKBH4Q9NXW9 302 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 CHRNA9Q9UGM1 479 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 OSGIN1Q9UJX0 560 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 TMED7Q9Y3B3 224 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 SPIN1Q9Y657 262 aaPredicted RBP9.03□□□□□ -0.96
NUP54-203ENST00000504173 AP4B1Q9Y6B7 739 aa9.03□□□□□ -0.96
NUP54-203ENST00000504173 ZGRF1Q86YA3 2104 aa9.02□□□□□ -0.96
NUP54-203ENST00000504173 TCRBV5S2A0A599 114 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 TMEM72A0PK05 275 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 TRAPPC13A5PLN9 417 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 ELOA3DA6NLF2 546 aaPredicted RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 AQP12BA6NM10 295 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 FIGNL2A6NMB9 653 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 EFNA2O43921 213 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 OPN1LWP04000 364 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 TFPIP10646 304 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 PNMTP11086 282 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 COX6B1P14854 86 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 CPN1P15169 458 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 SHC1P29353 583 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 SLC7A1P30825 629 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 YAP1P46937 504 aaKnown RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 CASP6P55212 293 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 CLDN18P56856 261 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 CLDN20P56880 219 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 KRTAP10-9P60411 292 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 PIN1Q13526 163 aaPredicted RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 BCL2A1Q16548 175 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 ELOA3BQ3SY89 546 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 TMEM176BQ3YBM2 270 aaPredicted RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 GXYLT1Q4G148 440 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 ZNF585AQ6P3V2 769 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 ULK3Q6PHR2 472 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 ATG4DQ86TL0 474 aaPredicted RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 CYP4Z1Q86W10 505 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 ADGRG3Q86Y34 549 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 AQP12AQ8IXF9 295 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 PM20D2Q8IYS1 436 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 ELOA3Q8NG57 546 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 SLC25A43Q8WUT9 341 aaPredicted RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 POP5Q969H6 163 aaKnown RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 WDYHV1Q96HA8 205 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 PRRC1Q96M27 445 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 KLHL15Q96M94 604 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 SEPHS2Q99611 448 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 POLR2J2Q9GZM3 115 aaKnown RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 PRDM14Q9GZV8 571 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 POLR2J3Q9H1A7 115 aaKnown RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 C12orf10Q9HB07 376 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 PNPLA3Q9NST1 481 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 SH3BGRL2Q9UJC5 107 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 OSGIN2Q9Y236 505 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 ZNF835Q9Y2P0 537 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 FAM32AQ9Y421 112 aaKnown RBP9.02□□□□□ -0.97
NUP54-203ENST00000504173 ENPP4Q9Y6X5 453 aa9.02□□□□□ -0.97
NUP54-203ENST00000504173 TRGV8A0A0C4DH27 118 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 DHRS12A0PJE2 317 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 ERICH4A6NGS2 130 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 H0YC42 278 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 J3KTA2 159 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 hCG_2039718K7EN88 272 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 EIF1AYO14602 144 aaKnown RBP9.01□□□□□ -0.97
NUP54-203ENST00000504173 TNFSF11O14788 317 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 ZNF208O43345 1280 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 CHP2O43745 196 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 OR5F1O95221 314 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 SEMG1P04279 462 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 FABP3P05413 133 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 ITGA2P17301 1181 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 FKBP2P26885 142 aaKnown RBP9.01□□□□□ -0.97
NUP54-203ENST00000504173 ERFP50548 548 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 MAP2K6P52564 334 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 SUCLG1P53597 346 aaKnown RBP9.01□□□□□ -0.97
NUP54-203ENST00000504173 CDH12P55289 794 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 TPD52P55327 224 aaPredicted RBP9.01□□□□□ -0.97
NUP54-203ENST00000504173 RPS3AP61247 264 aaKnown RBP9.01□□□□□ -0.97
NUP54-203ENST00000504173 CHRNB3Q05901 458 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 FOXD4Q12950 439 aaPredicted RBP9.01□□□□□ -0.97
NUP54-203ENST00000504173 FAM98BQ52LJ0 330 aaKnown RBP9.01□□□□□ -0.97
NUP54-203ENST00000504173 SYT14P1Q58G82 188 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 PDSS1Q5T2R2 415 aa9.01□□□□□ -0.97
NUP54-203ENST00000504173 SWT1Q5T5J6 900 aaKnown RBP9.01□□□□□ -0.97
NUP54-203ENST00000504173 Q6ZPB1 254 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms