RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NPAS1Q99742 590 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 TUBA1CQ9BQE3 449 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 RLIMQ9NVW2 624 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 ABCD2Q9UBJ2 740 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 USP22Q9UPT9 525 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 CHST2Q9Y4C5 530 aa10.67□□□□□ -0.7
SQSTM1-206ENST00000466342 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 PRORSD1PA6NEY8 169 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 SHISA8B8ZZ34 492 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 H0Y3Z8 333 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 ETV2O00321 342 aaPredicted RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 ADAM11O75078 769 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 GCM2O75603 506 aaPredicted RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 MFN2O95140 757 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 NTN1O95631 604 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 TMIGD3P0DMS9 266 aaPredicted RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 PEPDP12955 493 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF708P17019 499 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 PRKCAP17252 672 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 PSMA4P25789 261 aaKnown RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 ADH6P28332 368 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 EIF1P41567 113 aaKnown RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 STARP49675 285 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 MNAT1P51948 309 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 EEFSECP57772 596 aaKnown RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 SRYQ05066 204 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 LIPEQ05469 1076 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 RUNX1T1Q06455 604 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 FOXF1Q12946 379 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 VEZF1Q14119 521 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 ACKR1Q16570 336 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 SLC25A53Q5H9E4 307 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 DHRS4L2Q6PKH6 230 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 CCDC80Q76M96 950 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 TRPM8Q7Z2W7 1104 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 PATL1Q86TB9 770 aaKnown RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 MICU2Q8IYU8 434 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 PGAM4Q8N0Y7 254 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 CLIP4Q8N3C7 705 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 C9orf106Q8NAJ2 232 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 BHLHE22Q8NFJ8 381 aaPredicted RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 POC1BQ8TC44 478 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 TMEM234Q8WY98 164 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 ST8SIA1Q92185 356 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 SLC35B4Q969S0 331 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 NSL1Q96IY1 281 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 MRGPRX4Q96LA9 322 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 CCL19Q99731 98 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 RSPO3Q9BXY4 272 aaPredicted RBP10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 GSX2Q9BZM3 304 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 SPAG4Q9NPE6 437 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 NDE1Q9NXR1 346 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 JKAMPQ9P055 326 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF337Q9Y3M9 751 aa10.66□□□□□ -0.7
SQSTM1-206ENST00000466342 ELOVL7A1L3X0 281 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 SH3D21A4FU49 640 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 CFAP73A6NFT4 308 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 H3BML4 177 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 M0QX08 132 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 FAAHO00519 579 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 AP3D1O14617 1153 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 TLX2O43763 284 aaPredicted RBP10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 TPST1O60507 370 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 UQCRBP14927 111 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 CALB2P22676 271 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 ELK4P28324 431 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 RYKP34925 604 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 GSK3BP49841 420 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 CLDN18P56856 261 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 SESN3P58005 492 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 MXRA7P84157 204 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 EPS8Q12929 822 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 KRTAP24-1Q3LI83 254 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 CHMP1BQ7LBR1 199 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF550Q7Z398 422 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 ARMC8Q8IUR7 673 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 FBXO27Q8NI29 283 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF563Q8TA94 476 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 TAMM41Q96BW9 452 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 ZNF524Q96C55 264 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 RNF145Q96MT1 663 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 SFXN3Q9BWM7 321 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 PINK1Q9BXM7 581 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 ALG2Q9H553 416 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 ACER3Q9NUN7 267 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 TMEM181Q9P2C4 612 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 CLCF1Q9UBD9 225 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 STOML1Q9UBI4 398 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 AP4B1Q9Y6B7 739 aa10.65□□□□□ -0.7
SQSTM1-206ENST00000466342 OPN1SWP03999 348 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 CRHP06850 196 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 GKN3PP0CG01 181 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 T-ENOLP0DO92 83 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 ACAA2P42765 397 aaKnown RBP10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 IDH2P48735 452 aaKnown RBP10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 PTH2RP49190 550 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 AGFG1P52594 562 aaKnown RBP10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 CRYBA2P53672 197 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 SLC25A3Q00325 362 aa10.64□□□□□ -0.71
SQSTM1-206ENST00000466342 SELENBP1Q13228 472 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms