RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 GABRA6Q16445 453 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 C1QTNF12Q5T7M4 302 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 SAXO2Q658L1 398 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 EMBQ6PCB8 327 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 FRRS1Q6ZNA5 592 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 ADGRG3Q86Y34 549 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 C17orf78Q8N4C9 275 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 ZNF781Q8N8C0 355 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 TMEM158Q8WZ71 300 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 TESCQ96BS2 214 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 PKNOX2Q96KN3 472 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 MUS81Q96NY9 551 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 SLC35A5Q9BS91 424 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 INPP5KQ9BT40 448 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 CDC42EP3Q9UKI2 254 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.54□□□□□ -0.24
SKA3-204ENST00000462482 TMED7Q9Y3B3 224 aa13.54□□□□□ -0.24
SKA3-204ENST00000462482 IGHV4-30-2A0A087WSY4 118 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 A0A1W2PR80 420 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 BIRC5O15392 142 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 ZNF208O43345 1280 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 TYROBPO43914 113 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 WNT11O96014 354 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 CSF3P09919 207 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 IRX1P78414 480 aaPredicted RBP13.53□□□□□ -0.24
SKA3-204ENST00000462482 CCDC103Q8IW40 242 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 C1orf162Q8NEQ5 155 aaPredicted RBP13.53□□□□□ -0.24
SKA3-204ENST00000462482 OR10H5Q8NGA6 315 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 FAM168AQ92567 244 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 TRNT1Q96Q11 434 aaKnown RBP13.53□□□□□ -0.24
SKA3-204ENST00000462482 TNFRSF13CQ96RJ3 184 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 C1QTNF6Q9BXI9 259 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 DCTN4Q9UJW0 460 aa13.53□□□□□ -0.24
SKA3-204ENST00000462482 FBN3Q75N90 2809 aa13.52□□□□□ -0.24
SKA3-204ENST00000462482 E9PBE3 544 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 H7C417 338 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 RGS16O15492 202 aaPredicted RBP13.52□□□□□ -0.25
SKA3-204ENST00000462482 ITM2AO43736 263 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 KRT33AO76009 404 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 CREB1P16220 341 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 IL7RP16871 459 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 CXCR1P25024 350 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 TACR3P29371 465 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 SLC1A3P43003 542 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 ETV4P43268 484 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 PRPS1P60891 318 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 LOXL1Q08397 574 aaPredicted RBP13.52□□□□□ -0.25
SKA3-204ENST00000462482 LRRC74AQ0VAA2 488 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 CASP8Q14790 479 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 TMEM249Q2WGJ8 235 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 KRT71Q3SY84 523 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 FAM174BQ3ZCQ3 159 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 SPANXN4Q5MJ08 99 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 C9orf135Q5VTT2 229 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 AP1ARQ63HQ0 302 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 C11orf71Q6IPW1 123 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 ABHD12BQ7Z5M8 362 aaPredicted RBP13.52□□□□□ -0.25
SKA3-204ENST00000462482 HMGN2P46Q86SG4 172 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 ZNF440Q8IYI8 595 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 LRRC34Q8IZ02 419 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 OR52E4Q8NGH9 312 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 WDR60Q8WVS4 1066 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 CNOT9Q92600 299 aaKnown RBP13.52□□□□□ -0.25
SKA3-204ENST00000462482 PANX1Q96RD7 426 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 KCNK17Q96T54 332 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 ZBTB18Q99592 522 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 KCNS3Q9BQ31 491 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 BEX2Q9BXY8 128 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 MTHFD2LQ9H903 347 aaPredicted RBP13.52□□□□□ -0.25
SKA3-204ENST00000462482 CACYBPQ9HB71 228 aaKnown RBP13.52□□□□□ -0.25
SKA3-204ENST00000462482 BTNL2Q9UIR0 455 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 PCNX3Q9H6A9 2034 aa13.52□□□□□ -0.25
SKA3-204ENST00000462482 CFAP73A6NFT4 308 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 CCDC154A6NI56 674 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 GPRIN2O60269 458 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 SCN2BO60939 215 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 BCAS1O75363 584 aaPredicted RBP13.51□□□□□ -0.25
SKA3-204ENST00000462482 GPIP06744 558 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 DBIP07108 87 aaKnown RBP13.51□□□□□ -0.25
SKA3-204ENST00000462482 ITGA5P08648 1049 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 NR2F1P10589 423 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 APOBEC3AP31941 199 aaPredicted RBP13.51□□□□□ -0.25
SKA3-204ENST00000462482 SLC1A6P48664 564 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 EFNA4P52798 201 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 VSNL1P62760 191 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 SPOCK1Q08629 439 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 FUT5Q11128 374 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 GSTA3Q16772 222 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 C6orf52Q5T4I8 152 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 CYB5R2Q6BCY4 276 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 PAQR6Q6TCH4 344 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 LRRC74BQ6ZQY2 392 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 RNF130Q86XS8 419 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 PEX5LQ8IYB4 626 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 ZG16BQ96DA0 208 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 CCDC115Q96NT0 180 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 NUF2Q9BZD4 464 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 SLC17A5Q9NRA2 495 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 LPAR3Q9UBY5 353 aa13.51□□□□□ -0.25
SKA3-204ENST00000462482 OSGIN1Q9UJX0 560 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms