RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 GPR85P60893 370 aa24.31■■□□□ 1.48
MSX1-201ENST00000382723 AGAP7PQ5VUJ5 663 aa24.31■■□□□ 1.48
MSX1-201ENST00000382723 C12orf73Q69YU5 71 aa24.31■■□□□ 1.48
MSX1-201ENST00000382723 TMEM154Q6P9G4 183 aa24.31■■□□□ 1.48
MSX1-201ENST00000382723 SLC46A3Q7Z3Q1 461 aa24.31■■□□□ 1.48
MSX1-201ENST00000382723 AGAP4Q96P64 663 aa24.31■■□□□ 1.48
MSX1-201ENST00000382723 SIGLEC12Q96PQ1 595 aa24.31■■□□□ 1.48
MSX1-201ENST00000382723 TLX3O43711 291 aaPredicted RBP24.3■■□□□ 1.48
MSX1-201ENST00000382723 RPS5P46782 204 aaKnown RBP24.3■■□□□ 1.48
MSX1-201ENST00000382723 CCL11P51671 97 aa24.3■■□□□ 1.48
MSX1-201ENST00000382723 PTCHD4Q6ZW05 846 aa24.3■■□□□ 1.48
MSX1-201ENST00000382723 CLDN22Q8N7P3 220 aa24.3■■□□□ 1.48
MSX1-201ENST00000382723 OR5M1Q8NGP8 315 aa24.3■■□□□ 1.48
MSX1-201ENST00000382723 ENKD1Q9H0I2 346 aa24.3■■□□□ 1.48
MSX1-201ENST00000382723 TIMMDC1Q9NPL8 285 aa24.3■■□□□ 1.48
MSX1-201ENST00000382723 PCNX3Q9H6A9 2034 aa24.3■■□□□ 1.48
MSX1-201ENST00000382723 HCN1O60741 890 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 PTP4A3O75365 173 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 NEURL1O76050 574 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 RCBTB2O95199 551 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 APOBEC1P41238 236 aaKnown RBP24.29■■□□□ 1.48
MSX1-201ENST00000382723 FOXK1P85037 733 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 OR1C1Q15619 314 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 SMN1Q16637 294 aaKnown RBP24.29■■□□□ 1.48
MSX1-201ENST00000382723 DEFB109BQ30KR1 87 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 ZBED5Q49AG3 693 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 C1QL3Q5VWW1 255 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 TIGD3Q6B0B8 471 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 SMARCD3Q6STE5 483 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 ATP6V1C2Q8NEY4 427 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 BPIFB6Q8NFQ5 453 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 RHOXF1Q8NHV9 184 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 APH1BQ8WW43 257 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 HDAC2Q92769 488 aaKnown RBP24.29■■□□□ 1.48
MSX1-201ENST00000382723 TAAR8Q969N4 342 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 TMEM41AQ96HV5 264 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 MOGAT1Q96PD6 335 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 IL4I1Q96RQ9 567 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 OR11A1Q9GZK7 315 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 SLC25A19Q9HC21 320 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 SCOCQ9UIL1 159 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 DOCK10Q96BY6 2186 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 BMP7P18075 431 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 ZNF74Q16587 644 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 CCDC103Q8IW40 242 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 ZNF248Q8NDW4 579 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 OR52L1Q8NGH7 329 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 OR4Q3Q8NH05 313 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 POC1BQ8TC44 478 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 DEPPQ9NTK1 212 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 CHRNA9Q9UGM1 479 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 PCDHGB6Q9Y5F9 930 aa24.29■■□□□ 1.48
MSX1-201ENST00000382723 A8MVM7 634 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 EFSO43281 561 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 TRIM3O75382 744 aaPredicted RBP24.28■■□□□ 1.48
MSX1-201ENST00000382723 WBP4O75554 376 aaKnown RBP24.28■■□□□ 1.48
MSX1-201ENST00000382723 SOX8P57073 446 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 GXYLT1Q4G148 440 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 THSD4Q6ZMP0 1018 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 MRGPRX4Q96LA9 322 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 MCCC2Q9HCC0 563 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 NANSQ9NR45 359 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 ZNF337Q9Y3M9 751 aa24.28■■□□□ 1.48
MSX1-201ENST00000382723 TRAV36DV7A0A075B6V5 113 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 DPP4P27487 766 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 MLLT10P55197 1068 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 CDH15P55291 814 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 LTBQ06643 244 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 FHL1Q13642 323 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 OR2T33Q8NG76 320 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 UBQLN3Q9H347 655 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 RPH3AQ9Y2J0 694 aaPredicted RBP24.27■■□□□ 1.48
MSX1-201ENST00000382723 ETV2O00321 342 aaPredicted RBP24.27■■□□□ 1.48
MSX1-201ENST00000382723 XPNPEP2O43895 674 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 IGF2P01344 180 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 IL11P20809 199 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 SLC9A3P48764 834 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 DLX5P56178 289 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 SLC25A53Q5H9E4 307 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 RBM48Q5RL73 367 aaKnown RBP24.27■■□□□ 1.48
MSX1-201ENST00000382723 RPL13AP3Q6NVV1 102 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 TCEANCQ8N8B7 351 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 SPTBN2O15020 2390 aa24.27■■□□□ 1.48
MSX1-201ENST00000382723 HTR3EA5X5Y0 456 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 SLC1A7O00341 560 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 GABRB1P18505 474 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 CNR1P21554 472 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 SNAPC1Q16533 368 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 PGGHGQ32M88 737 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 KCTD21Q4G0X4 260 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 CRTC2Q53ET0 693 aaPredicted RBP24.26■■□□□ 1.47
MSX1-201ENST00000382723 C1orf140Q5VVS0 124 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 SLC25A36Q96CQ1 311 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 IFT27Q9BW83 186 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 HES7Q9BYE0 225 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 YTHDF1Q9BYJ9 559 aaKnown RBP24.26■■□□□ 1.47
MSX1-201ENST00000382723 ZNF552Q9H707 407 aaPredicted RBP24.26■■□□□ 1.47
MSX1-201ENST00000382723 DKKL1Q9UK85 242 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 MSRB2Q9Y3D2 182 aa24.26■■□□□ 1.47
MSX1-201ENST00000382723 PRKYO43930 277 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms