RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 OR9Q1Q8NGQ5 310 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 TP53INP1Q96A56 240 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 POLR2J2Q9GZM3 115 aaKnown RBP15.01□□□□□ -0.01
USP4-201ENST00000265560 CDCP1Q9H5V8 836 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 DMXL2Q8TDJ6 3036 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 NSG1A0A0A6YYJ2 146 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 CXCR1P25024 350 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 CDH11P55287 796 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 ERVK-25P63136 954 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 CSNK2BP67870 215 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 TIGD6Q17RP2 521 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 SLC16A12Q6ZSM3 486 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 ELP5Q8TE02 316 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 TAAR8Q969N4 342 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 LRFN5Q96NI6 719 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 TMEM185BQ9H7F4 350 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 METTL7AQ9H8H3 244 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 NXT1Q9UKK6 140 aaKnown RBP15.01□□□□□ -0.01
USP4-201ENST00000265560 IER3IP1Q9Y5U9 82 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 SH3D21A4FU49 640 aa15□□□□□ -0.01
USP4-201ENST00000265560 TRMUO75648 421 aaKnown RBP15□□□□□ -0.01
USP4-201ENST00000265560 SLC15A1P46059 708 aa15□□□□□ -0.01
USP4-201ENST00000265560 VBP1P61758 197 aa15□□□□□ -0.01
USP4-201ENST00000265560 RPS7P62081 194 aaKnown RBP15□□□□□ -0.01
USP4-201ENST00000265560 E2F1Q01094 437 aa15□□□□□ -0.01
USP4-201ENST00000265560 AQP6Q13520 282 aa15□□□□□ -0.01
USP4-201ENST00000265560 OR2G6Q5TZ20 316 aa15□□□□□ -0.01
USP4-201ENST00000265560 OR52I1Q8NGK6 324 aa15□□□□□ -0.01
USP4-201ENST00000265560 OR5W2Q8NH69 310 aa15□□□□□ -0.01
USP4-201ENST00000265560 B4GALNT2Q8NHY0 566 aa15□□□□□ -0.01
USP4-201ENST00000265560 LGALS12Q96DT0 336 aa15□□□□□ -0.01
USP4-201ENST00000265560 IMMP1LQ96LU5 166 aa15□□□□□ -0.01
USP4-201ENST00000265560 TTTY10Q9BZA0 68 aa15□□□□□ -0.01
USP4-201ENST00000265560 RNF167Q9H6Y7 350 aa15□□□□□ -0.01
USP4-201ENST00000265560 PPIEQ9UNP9 301 aaKnown RBP15□□□□□ -0.01
USP4-201ENST00000265560 RPL36Q9Y3U8 105 aaKnown RBP15□□□□□ -0.01
USP4-201ENST00000265560 RCBTB2O95199 551 aa15□□□□□ -0.01
USP4-201ENST00000265560 MRPL3P09001 348 aaKnown RBP15□□□□□ -0.01
USP4-201ENST00000265560 CD36P16671 472 aa15□□□□□ -0.01
USP4-201ENST00000265560 DCKP27707 260 aa15□□□□□ -0.01
USP4-201ENST00000265560 ATP6V1E1P36543 226 aa15□□□□□ -0.01
USP4-201ENST00000265560 CRMP1Q14194 572 aa15□□□□□ -0.01
USP4-201ENST00000265560 ZNF362Q5T0B9 420 aaPredicted RBP15□□□□□ -0.01
USP4-201ENST00000265560 ZNF468Q5VIY5 522 aaPredicted RBP15□□□□□ -0.01
USP4-201ENST00000265560 CXXC5Q7LFL8 322 aaKnown RBP15□□□□□ -0.01
USP4-201ENST00000265560 SLC46A3Q7Z3Q1 461 aa15□□□□□ -0.01
USP4-201ENST00000265560 ZNF440Q8IYI8 595 aa15□□□□□ -0.01
USP4-201ENST00000265560 KDM8Q8N371 416 aa15□□□□□ -0.01
USP4-201ENST00000265560 SVOPQ8N4V2 548 aa15□□□□□ -0.01
USP4-201ENST00000265560 C17orf47Q8NEP4 570 aa15□□□□□ -0.01
USP4-201ENST00000265560 BRIX1Q8TDN6 353 aaKnown RBP15□□□□□ -0.01
USP4-201ENST00000265560 PTP4A1Q93096 173 aa15□□□□□ -0.01
USP4-201ENST00000265560 CDC6Q99741 560 aa15□□□□□ -0.01
USP4-201ENST00000265560 ZNF346Q9UL40 294 aaKnown RBP15□□□□□ -0.01
USP4-201ENST00000265560 TMEM5Q9Y2B1 443 aa15□□□□□ -0.01
USP4-201ENST00000265560 PCDHGB1Q9Y5G3 927 aa15□□□□□ -0.01
USP4-201ENST00000265560 EFCAB10A6NFE3 127 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 HCN1O60741 890 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 MTNR1AP48039 350 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 ETV1P50549 477 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 RAB15P59190 212 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 RPS3AP61247 264 aaKnown RBP14.99□□□□□ -0.01
USP4-201ENST00000265560 TGIF1Q15583 401 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 CSRP2Q16527 193 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 OCLNQ16625 522 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 OR52E2Q8NGJ4 325 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 OR51G2Q8NGK0 314 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 GPR119Q8TDV5 335 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 RASD2Q96D21 266 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 NANSQ9NR45 359 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 CPAMD8Q8IZJ3 1885 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 FAM171A2A8MVW0 826 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 IL11P20809 199 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 GRK5P34947 590 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 RBM34P42696 430 aaKnown RBP14.99□□□□□ -0.01
USP4-201ENST00000265560 NCS1P62166 190 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 SPCS2Q15005 226 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 TMEM201Q5SNT2 666 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 CDCP2Q5VXM1 449 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 LYPD8Q6UX82 237 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 PPP1R32Q7Z5V6 425 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 CLDN22Q8N7P3 220 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 ZPLD1Q8TCW7 415 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 HGDQ93099 445 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 TUBA1CQ9BQE3 449 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 COL25A1Q9BXS0 654 aaPredicted RBP14.99□□□□□ -0.01
USP4-201ENST00000265560 FARSAQ9Y285 508 aaKnown RBP14.99□□□□□ -0.01
USP4-201ENST00000265560 C11orf98E9PRG8 122 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 GP1BBP13224 206 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 HIST1H1CP16403 213 aaKnown RBP14.99□□□□□ -0.01
USP4-201ENST00000265560 P2RX1P51575 399 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 Q0VFX4 171 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 ARMCX4Q5H9R4 360 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 SYT6Q5T7P8 510 aaPredicted RBP14.99□□□□□ -0.01
USP4-201ENST00000265560 OTPQ5XKR4 325 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 RTL4Q6ZR62 310 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 TMCO6Q96DC7 493 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 TMEM80Q96HE8 168 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 FBXL2Q9UKC9 423 aa14.99□□□□□ -0.01
USP4-201ENST00000265560 LOC102723996A0A087X1L8 192 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms