RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ANKRD10Q9NXR5 420 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 MRPS7Q9Y2R9 242 aaKnown RBP10.64□□□□□ -0.71
VPS4A-201ENST00000254950 PCDHGA6Q9Y5G7 932 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 GBF1Q92538 1859 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 OR7A10O76100 309 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 DLGAP3O95886 979 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 C1QCP02747 245 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 F13BP05160 661 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 HSD11B1P28845 292 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 HOXC12P31275 282 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 TUBA1BP68363 451 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 MAPK14Q16539 360 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF791Q3KP31 576 aaPredicted RBP10.63□□□□□ -0.71
VPS4A-201ENST00000254950 ANKDD1AQ495B1 522 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 FAM69AQ5T7M9 428 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 SLC6A19Q695T7 634 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 KIRREL2Q6UWL6 708 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 TUBA1AQ71U36 451 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 LSM14AQ8ND56 463 aaKnown RBP10.63□□□□□ -0.71
VPS4A-201ENST00000254950 GGHQ92820 318 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 SPACA9Q96E40 222 aaPredicted RBP10.63□□□□□ -0.71
VPS4A-201ENST00000254950 MARCH7Q9H992 704 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 FAM86C1Q9NVL1 165 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 PEX16Q9Y5Y5 336 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 THADAQ6YHU6 1953 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 FITM1A5D6W6 292 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 PRR19A6NJB7 356 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 MAGEB3O15480 346 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 TBX6O95947 436 aaPredicted RBP10.63□□□□□ -0.71
VPS4A-201ENST00000254950 ROR2Q01974 943 aaKnown RBP10.63□□□□□ -0.71
VPS4A-201ENST00000254950 HEPHL1Q6MZM0 1159 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 ARHGAP22Q7Z5H3 698 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 SLC19A3Q9BZV2 496 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 LHPPQ9H008 270 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 PLEKHA1Q9HB21 404 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 FBXO8Q9NRD0 319 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 LNP1A1A4G5 178 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 OR6C70A6NIJ9 312 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 CENPBD1B2RD01 187 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 HRKO00198 91 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 PRSS23O95084 383 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 FARS2O95363 451 aaKnown RBP10.63□□□□□ -0.71
VPS4A-201ENST00000254950 CD14P08571 375 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 C21orf33P30042 268 aaPredicted RBP10.63□□□□□ -0.71
VPS4A-201ENST00000254950 SLC15A1P46059 708 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 ISXQ2M1V0 245 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 C1orf140Q5VVS0 124 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF620Q6ZNG0 422 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 MEPCEQ7L2J0 689 aaKnown RBP10.63□□□□□ -0.71
VPS4A-201ENST00000254950 KLBQ86Z14 1044 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 UBE2J2Q8N2K1 259 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 MEIOBQ8N635 442 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 FLVCR1-AS1Q8TAF5 88 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 ST8SIA1Q92185 356 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 TTYH2Q9BSA4 534 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 GPR27Q9NS67 375 aa10.63□□□□□ -0.71
VPS4A-201ENST00000254950 OBSL1O75147 1896 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 MT-ATP6P00846 226 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 TFAP2AP05549 437 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 POU3F2P20265 443 aaPredicted RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 APOBEC1P41238 236 aaKnown RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 HMGA2P52926 109 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 WNT4P56705 351 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 SEC23BQ15437 767 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 TBCEQ15813 527 aaPredicted RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 SGCAQ16586 387 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 SLC25A43Q8WUT9 341 aaPredicted RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 GATAD2BQ8WXI9 593 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 FUNDC2Q9BWH2 189 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 MROQ9BYG7 248 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 ZAR1LA6NP61 321 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 EIF1AYO14602 144 aaKnown RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 F10P00742 488 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 SDC2P34741 201 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 GNALP38405 381 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 RORCP51449 518 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 PER3P56645 1201 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 SLC37A1P57057 533 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 PPP3R1P63098 170 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 POU3F1Q03052 451 aaPredicted RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF141Q15928 474 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 DPY19L2P2Q6ZN68 376 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 PTPMT1Q8WUK0 201 aaPredicted RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 OIT3Q8WWZ8 545 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 BORCS5Q969J3 196 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 UBE2FQ969M7 185 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 TMIGD2Q96BF3 282 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 AICDAQ9GZX7 198 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 P4HTMQ9NXG6 502 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 PSORS1C1Q9UIG5 152 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 TEX13CA0A0J9YWL9 993 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 FAM171A2A8MVW0 826 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF879B4DU55 563 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 GYPBP06028 91 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF806P0C7X5 589 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 FGF5P12034 268 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 FOXK2Q01167 660 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 EMX1Q04741 257 aaPredicted RBP10.62□□□□□ -0.71
VPS4A-201ENST00000254950 SRYQ05066 204 aa10.62□□□□□ -0.71
VPS4A-201ENST00000254950 CRMP1Q14194 572 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms