RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 DEFB124Q8NES8 71 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 UCN3Q969E3 161 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 MS4A6EQ96DS6 147 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 ZFP3Q96NJ6 502 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 DCLRE1CQ96SD1 692 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 CNN2Q99439 309 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 SCPEP1Q9HB40 452 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 NUDT15Q9NV35 164 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 ATPIF1Q9UII2 106 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 SLC7A7Q9UM01 511 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 SPATA2Q9UM82 520 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 SF3B6Q9Y3B4 125 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 CSNK1G3Q9Y6M4 447 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 STON1Q9Y6Q2 735 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 MDC1Q14676 2089 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 TRAV1-2A0A0B4J238 106 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 GLOD5A6NK44 160 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 SULT1B1O43704 296 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 SLC22A5O76082 557 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF432O94892 652 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 C8orf89P0DMQ9 161 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 ELK1P19419 428 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 NT5EP21589 574 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 SLC6A1P30531 599 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 FNTBP49356 437 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 P2RX3P56373 397 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 POU6F2P78424 691 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 GALK2Q01415 458 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 RPL6Q02878 288 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 ILF3Q12906 894 aaKnown RBP eCLIP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 MADCAM1Q13477 382 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 PON3Q15166 354 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 FLYWCH1Q4VC44 716 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 TMEM164Q5U3C3 297 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 MFSD12Q6NUT3 480 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 FAM180BQ6P0A1 224 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF613Q6PF04 617 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 RTL4Q6ZR62 310 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 BTN2A1Q7KYR7 527 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 LINGO2Q7L985 606 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 ARL14Q8N4G2 192 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 OR4M1Q8NGD0 313 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 OR4D11Q8NGI4 311 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 OR9A2Q8NGT5 310 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 TCEAL4Q96EI5 215 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 TRMT61AQ96FX7 289 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 COX14Q96I36 57 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 RNF170Q96K19 258 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 TBX5Q99593 518 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 PLA2G12AQ9BZM1 189 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 PPIL3Q9H2H8 161 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 SLC38A1Q9H2H9 487 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 MTG2Q9H4K7 406 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 CMC2Q9NRP2 79 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 MAN2C1Q9NTJ4 1040 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 MAT2BQ9NZL9 334 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 OR6C2Q9NZP2 312 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 LUZP4Q9P127 313 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 EIF3KQ9UBQ5 218 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 YARS2Q9Y2Z4 477 aaKnown RBP3.69□□□□□ -1.82
SCN1A-214ENST00000637038 CPAMD8Q8IZJ3 1885 aa3.69□□□□□ -1.82
SCN1A-214ENST00000637038 MYO9BQ13459 2157 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GXYLT2A0PJZ3 443 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SYNDIG1LA6NDD5 238 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 POM121CA8CG34 1229 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 M0R233 179 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 FZD7O75084 574 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SEMA7AO75326 666 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 KRT33AO76009 404 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TCRBP04435 133 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TPOP07202 933 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 C5AR1P21730 350 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 EDNRAP25101 427 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CERS1P27544 350 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 PSMB5P28074 263 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RPL4P36578 427 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 BCL6P41182 706 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RBM34P42696 430 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GPR143P51810 404 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CAV3P56539 151 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CTBP2P56545 445 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RAB8AP61006 207 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RPS21P63220 83 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 TNFRSF17Q02223 184 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 DUSP8Q13202 625 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 SNTA1Q13424 505 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 GPR68Q15743 365 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZIC1Q15915 447 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ARHGAP11BQ3KRB8 267 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 CCDC58Q4VC31 144 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ACSM3Q53FZ2 586 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 UBE2NLQ5JXB2 153 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 PLA2G2CQ5R387 149 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 FAM205BPQ63HN1 556 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF776Q68DI1 518 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 ARMC6Q6NXE6 501 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RPL22L1Q6P5R6 122 aaKnown RBP3.68□□□□□ -1.82
SCN1A-214ENST00000637038 RFPL4BQ6ZWI9 263 aa3.68□□□□□ -1.82
SCN1A-214ENST00000637038 OVCH1Q7RTY7 1134 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms