RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SUSD5O60279 629 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 SNAP29O95721 258 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 HIST1H2ABP04908 130 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 FUT4P22083 530 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 CAPGP40121 348 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 GSSP48637 474 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 CLK1P49759 484 aaKnown RBP13.83□□□□□ -0.2
TRIM28-209ENST00000597423 PLGLB1Q02325 96 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 CRYZQ08257 329 aaKnown RBP13.83□□□□□ -0.2
TRIM28-209ENST00000597423 ZIK1Q3SY52 487 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-209ENST00000597423 NHSL2Q5HYW2 709 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 IGFL3Q6UXB1 125 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 WDR88Q6ZMY6 472 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 HIST3H2AQ7L7L0 130 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 ADGRG3Q86Y34 549 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 C10orf53Q8N6V4 93 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 CYGBQ8WWM9 190 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 OSTF1Q92882 214 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 HIST1H2ACQ93077 130 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 DDIT4LQ96D03 193 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 NIPSNAP1Q9BPW8 284 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 PIGQQ9BRB3 760 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 ADI1Q9BV57 179 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 NDEL1Q9GZM8 345 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 RIBC2Q9H4K1 309 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 KLHL1Q9NR64 748 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 TUBA8Q9NY65 449 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-209ENST00000597423 CHRNA9Q9UGM1 479 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 C15orf41Q9Y2V0 281 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 RAXQ9Y2V3 346 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 NINQ8N4C6 2090 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 TRAV36DV7A0A075B6V5 113 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 UNC119BA6NIH7 251 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 C17orf51A8MQB3 221 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 KPNA4O00629 521 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-209ENST00000597423 TRAPPC6AO75865 159 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 RCBTB2O95199 551 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 SAGP10523 405 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-209ENST00000597423 ZNF17P17021 662 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 CCNA2P20248 432 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 SLC9A3P48764 834 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 TPD52P55327 224 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-209ENST00000597423 GPR85P60893 370 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 NPRL3Q12980 569 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 IL18R1Q13478 541 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 MED21Q13503 144 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 MFSD13AQ14CX5 517 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 INPP5JQ15735 1006 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-209ENST00000597423 ANKDD1AQ495B1 522 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 RPL13AP3Q6NVV1 102 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 POMZP3Q6PJE2 187 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 UNQ6494/PRO21346Q6UXR6 183 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 RASSF6Q6ZTQ3 369 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 SLC43A2Q8N370 569 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 GTPBP8Q8N3Z3 284 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-209ENST00000597423 OR6S1Q8NH40 331 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 SLC25A43Q8WUT9 341 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-209ENST00000597423 TFAP2CQ92754 450 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 SCMH1Q96GD3 660 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 FAM46AQ96IP4 442 aaKnown RBP13.82□□□□□ -0.2
TRIM28-209ENST00000597423 GABARAPL3Q9BY60 117 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 POTEKPQ9BYX7 375 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 FAM118AQ9NWS6 357 aa13.82□□□□□ -0.2
TRIM28-209ENST00000597423 A0A087WV48 116 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 LOC100130705A0A1B0GUX0 176 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 GJE1A6NN92 205 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 H3BN98 237 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 ACOT7O00154 380 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 SLC16A6O15403 523 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 DENRO43583 198 aaKnown RBP13.81□□□□□ -0.2
TRIM28-209ENST00000597423 HCN1O60741 890 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 MITFO75030 526 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-209ENST00000597423 AHSA1O95433 338 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 NTN1O95631 604 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 MT-ATP6P00846 226 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 ITGB2P05107 769 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 BMP7P18075 431 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 FUT1P19526 365 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 MST1P26927 711 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 GDF1P27539 372 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 ELK4P28324 431 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 CRISP1P54107 249 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 NUP107P57740 925 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 FOXF1Q12946 379 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 KCNAB2Q13303 367 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 SLC36A3Q495N2 470 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 C6orf52Q5T4I8 152 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 KLHL17Q6TDP4 642 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 GALNTL5Q7Z4T8 443 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 OAFQ86UD1 273 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 SLC22A16Q86VW1 577 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 CLDN22Q8N7P3 220 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 OR14L1PQ8NHC6 308 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 PFN4Q8NHR9 129 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 APOL4Q9BPW4 351 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 MEPEQ9NQ76 525 aaPredicted RBP13.81□□□□□ -0.2
TRIM28-209ENST00000597423 DEPPQ9NTK1 212 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 QPCTLQ9NXS2 382 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 ZNF337Q9Y3M9 751 aa13.81□□□□□ -0.2
TRIM28-209ENST00000597423 AP4B1Q9Y6B7 739 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms