RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 BBS1Q8NFJ9 593 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 OR2Y1Q8NGV0 311 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 ZNF420Q8TAQ5 688 aaPredicted RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 BRIX1Q8TDN6 353 aaKnown RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 RAB2BQ8WUD1 216 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 RNFT2Q96EX2 444 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 TMEM80Q96HE8 168 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 LRFN5Q96NI6 719 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 CDC6Q99741 560 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 ZNF426Q9BUY5 554 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 OR51V1Q9H2C8 321 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 MED20Q9H944 212 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 EXOSC3Q9NQT5 275 aaKnown RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 FKBP14Q9NWM8 211 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 CLEC2DQ9UHP7 191 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 KMT2EQ8IZD2 1858 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 CUL9Q8IWT3 2517 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 TMEM200CA6NKL6 621 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 PLD2O14939 933 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 PRODHO43272 600 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 SLC25A12O75746 678 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 MT-CO3P00414 261 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 PGCP20142 388 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 MST1P26927 711 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 RPS5P46782 204 aaKnown RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 CBFBQ13951 182 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 EFR3AQ14156 821 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 TBCEQ15813 527 aaPredicted RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 COL28A1Q2UY09 1125 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 TMEM201Q5SNT2 666 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 SYT6Q5T7P8 510 aaPredicted RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 TMEM164Q5U3C3 297 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 C6orf15Q6UXA7 325 aaPredicted RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 LINC00114Q6XXX2 140 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 CXXC5Q7LFL8 322 aaKnown RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 P2RY8Q86VZ1 359 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 CLDN22Q8N7P3 220 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 CYB561A3Q8NBI2 242 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 B4GALNT2Q8NHY0 566 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 FCGR1BQ92637 280 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 ERMAPQ96PL5 475 aaPredicted RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 OR5M11Q96RB7 305 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 TAAR9Q96RI9 348 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 SIGLEC11Q96RL6 698 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 METTL7AQ9H8H3 244 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 ZNF160Q9HCG1 818 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 HINT3Q9NQE9 182 aaKnown RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 NANSQ9NR45 359 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 FAM86C1Q9NVL1 165 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 CHCHD3Q9NX63 227 aaKnown RBP6.45□□□□□ -1.38
SMG1-215ENST00000568239 VDAC3Q9Y277 283 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 HS3ST3B1Q9Y662 390 aa6.45□□□□□ -1.38
SMG1-215ENST00000568239 EML6Q6ZMW3 1958 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 MUC6Q6W4X9 2439 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 IGHV1-45A0A0A0MS14 117 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 NSG1A0A0A6YYJ2 146 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 A0A1W2PQD3 144 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 BHLHE40O14503 412 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 SOCS6O14544 535 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 MYL12BO14950 172 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 FADS1O60427 444 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 ITGA10O75578 1167 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 GP1BBP13224 206 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 ZNF182P17025 639 aaPredicted RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 MYL12AP19105 171 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 LCN1P31025 176 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 SLC6A6P31641 620 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 LIPAP38571 399 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 TMED10P49755 219 aaKnown RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 P2RX1P51575 399 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 TMBIM6P55061 237 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 FOXK2Q01167 660 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 PCOLCEQ15113 449 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 QPRTQ15274 297 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 ARMCX4Q5H9R4 360 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 HES3Q5TGS1 186 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 PAQR6Q6TCH4 344 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 TIPARPQ7Z3E1 657 aaKnown RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 ATG4DQ86TL0 474 aaPredicted RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 ERI1Q8IV48 349 aaKnown RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 OR10G3Q8NGC4 313 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 OR5W2Q8NH69 310 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 SLC22A8Q8TCC7 542 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 RFKQ969G6 155 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 MCCC2Q9HCC0 563 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 KLHL1Q9NR64 748 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 MED11Q9P086 117 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 OSGIN1Q9UJX0 560 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 ICAM5Q9UMF0 924 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 URB1O60287 2271 aaKnown RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 IGKV1D-42A0A075B6H8 117 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 LOC100506127A0A0U1RQW1 187 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 PNMA8CA0A1B0GUJ8 204 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 ZC3H12DA2A288 527 aaKnown RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 RIIAD1A6NNX1 92 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 PRR23D1E9PI22 279 aaPredicted RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 EIF4E2O60573 245 aaKnown RBP6.44□□□□□ -1.38
SMG1-215ENST00000568239 PTP4A3O75365 173 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 NDUFB2O95178 105 aa6.44□□□□□ -1.38
SMG1-215ENST00000568239 GYPBP06028 91 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms