RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 ITGA5P08648 1049 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 H2AFXP16104 143 aaPredicted RBP11.23□□□□□ -0.61
USP28-212ENST00000544750 ITGA2P17301 1181 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 RNF144AP50876 292 aaPredicted RBP11.23□□□□□ -0.61
USP28-212ENST00000544750 SLC18A1P54219 525 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 CHRNB3Q05901 458 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 NDUFAF6Q330K2 333 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 GALNTL6Q49A17 601 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 C3orf33Q6P1S2 294 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 TMPPEQ6ZT21 453 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 DEPDC4Q8N2C3 294 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.23□□□□□ -0.61
USP28-212ENST00000544750 ANKRD42Q8N9B4 389 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 ZFP28Q8NHY6 868 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 CDS1Q92903 461 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 ARL8AQ96BM9 186 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 FOXN4Q96NZ1 517 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 TSSK3Q96PN8 268 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 PIMREGQ9BSJ6 248 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 PIGUQ9H490 435 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 REEP4Q9H6H4 257 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 TAS2R16Q9NYV7 291 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 BAIAP2L1Q9UHR4 511 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 TMED5Q9Y3A6 229 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 RAP2CQ9Y3L5 183 aa11.23□□□□□ -0.61
USP28-212ENST00000544750 CIB4A0PJX0 185 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 KIAA0513O60268 411 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 HMGN2P05204 90 aaKnown RBP11.22□□□□□ -0.61
USP28-212ENST00000544750 BMP4P12644 408 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 BCKDHAP12694 445 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 ZNF23P17027 643 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 SLC1A6P48664 564 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 DIO1P49895 249 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 ATP12AP54707 1039 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 PHC1P78364 1004 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 SLC25A3Q00325 362 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 BST1Q10588 318 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 QPRTQ15274 297 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 ZSWIM7Q19AV6 140 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 TIGD2Q4W5G0 525 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 OR7E24Q6IFN5 339 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 SZRD1Q7Z422 152 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 HOMEZQ8IX15 550 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 OR5W2Q8NH69 310 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 CLHC1Q8NHS4 586 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 OR5B2Q96R09 309 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 C1QTNF6Q9BXI9 259 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 HOXD1Q9GZZ0 328 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 ASB6Q9NWX5 421 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 ATP23Q9Y6H3 246 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 KCNE3Q9Y6H6 103 aa11.22□□□□□ -0.61
USP28-212ENST00000544750 PKD1L1Q8TDX9 2849 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 LOC390937A0A1W2PQ73 354 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 KCNAB3O43448 404 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 AKAP10O43572 662 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 EIF4E2O60573 245 aaKnown RBP11.21□□□□□ -0.61
USP28-212ENST00000544750 PEX11AO75192 247 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 SLC16A1P53985 500 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 LASP1Q14847 261 aaKnown RBP11.21□□□□□ -0.61
USP28-212ENST00000544750 MLC1Q15049 377 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 PDCD2Q16342 344 aaPredicted RBP11.21□□□□□ -0.61
USP28-212ENST00000544750 TTMPQ5BVD1 217 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 C6orf136Q5SQH8 315 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 AGBL2Q5U5Z8 902 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 HHATQ5VTY9 493 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 CDC73Q6P1J9 531 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 MTDHQ86UE4 582 aaKnown RBP11.21□□□□□ -0.61
USP28-212ENST00000544750 ZNF527Q8NB42 609 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 MGARPQ8TDB4 240 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 JADE3Q92613 823 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 APH1AQ96BI3 265 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 C3orf49Q96BT1 292 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 PPCDCQ96CD2 204 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 PPP3R2Q96LZ3 170 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 C1orf50Q9BV19 199 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 BPESC1Q9GZL8 116 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 QRSL1Q9H0R6 528 aaKnown RBP11.21□□□□□ -0.61
USP28-212ENST00000544750 FKRPQ9H9S5 495 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 MYOZ1Q9NP98 299 aaPredicted RBP11.21□□□□□ -0.61
USP28-212ENST00000544750 EMC3Q9P0I2 261 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 SH3BP4Q9P0V3 963 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.21□□□□□ -0.61
USP28-212ENST00000544750 NOSIPQ9Y314 301 aaKnown RBP11.21□□□□□ -0.61
USP28-212ENST00000544750 DTNAQ9Y4J8 743 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 FKBP7Q9Y680 259 aa11.21□□□□□ -0.61
USP28-212ENST00000544750 CCT8L1PA6NM43 557 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 ATP6V1G2-DDX39BF2Z307 99 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 H3BNH8 94 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 GTPBP1O00178 669 aaKnown RBP11.2□□□□□ -0.62
USP28-212ENST00000544750 SULT2B1O00204 365 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 ZNF264O43296 627 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 SNNO75324 88 aaPredicted RBP11.2□□□□□ -0.62
USP28-212ENST00000544750 EGR1P18146 543 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 EFNA1P20827 205 aaPredicted RBP11.2□□□□□ -0.62
USP28-212ENST00000544750 ATP6V1C1P21283 382 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 CSNK2A1P68400 391 aaPredicted RBP11.2□□□□□ -0.62
USP28-212ENST00000544750 STX3Q13277 289 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 SKP2Q13309 424 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 CBFBQ13951 182 aa11.2□□□□□ -0.62
USP28-212ENST00000544750 PTGR1Q14914 329 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms