RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CLECL1Q8IZS7 167 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 FAM71CQ8NEG0 241 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 DNAJA3Q96EY1 480 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 ARL5BQ96KC2 179 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 MUS81Q96NY9 551 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 KCNK17Q96T54 332 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 MANSC1Q9H8J5 431 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 CTPS2Q9NRF8 586 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 ASB6Q9NWX5 421 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 TAS2R16Q9NYV7 291 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 MALT1Q9UDY8 824 aa20.71■□□□□ 0.91
CPSF1-202ENST00000527827 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP20.7■□□□□ 0.95e-15■■■□□ 15.1
CPSF1-202ENST00000527827 ITGA5P08648 1049 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 PGM1P36871 562 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 APOBEC1P41238 236 aaKnown RBP20.7■□□□□ 0.9
CPSF1-202ENST00000527827 SLC16A1P53985 500 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 GABRA6Q16445 453 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 EIF3MQ7L2H7 374 aaKnown RBP20.7■□□□□ 0.9
CPSF1-202ENST00000527827 FAM168AQ92567 244 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 APOPT1Q96IL0 206 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 C1QTNF6Q9BXI9 259 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 SLC17A7Q9P2U7 560 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 CHRNA9Q9UGM1 479 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 ARFGEF3Q5TH69 2177 aa20.7■□□□□ 0.9
CPSF1-202ENST00000527827 M0R1B8 84 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 SKAP2O75563 359 aaPredicted RBP20.69■□□□□ 0.9
CPSF1-202ENST00000527827 PMS2P2O95744 297 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 F12P00748 615 aaPredicted RBP20.69■□□□□ 0.9
CPSF1-202ENST00000527827 CASP9P55211 416 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 ZNF544Q6NX49 715 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 CCDC103Q8IW40 242 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 WDR31Q8NA23 367 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 PIGXQ8TBF5 258 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 C10orf105Q8TEF2 133 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 ZHX1-C8orf76Q96EF9 292 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 SLC35G5Q96KT7 338 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 INPP5KQ9BT40 448 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 BEX2Q9BXY8 128 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 ZDHHC2Q9UIJ5 367 aa20.69■□□□□ 0.9
CPSF1-202ENST00000527827 NBEAL1Q6ZS30 2694 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 PDLIM1O00151 329 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 GPR171O14626 319 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 KIAA0513O60268 411 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 IGHV4-31P0DP07 118 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 G6PDP11413 515 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 PGS1Q32NB8 556 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 KRTAP24-1Q3LI83 254 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 OR7E24Q6IFN5 339 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 LSRQ86X29 649 aaPredicted RBP20.68■□□□□ 0.9
CPSF1-202ENST00000527827 DEPDC4Q8N2C3 294 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 OR52E4Q8NGH9 312 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 AMBRA1Q9C0C7 1298 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 OR11A1Q9GZK7 315 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 OR51I1Q9H343 314 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 HDGFL3Q9Y3E1 203 aa20.68■□□□□ 0.9
CPSF1-202ENST00000527827 SPIN1Q9Y657 262 aaPredicted RBP20.68■□□□□ 0.9
CPSF1-202ENST00000527827 RNF103-CHMP3A0A140T963 221 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 DNPH1O43598 174 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 MRPL33O75394 65 aaKnown RBP20.67■□□□□ 0.9
CPSF1-202ENST00000527827 CLDN8P56748 225 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 PLAURQ03405 335 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 CYB5R2Q6BCY4 276 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 OR4F3Q6IEY1 312 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 TYW3Q6IPR3 259 aaKnown RBP20.67■□□□□ 0.9
CPSF1-202ENST00000527827 C16orf62Q7Z3J2 963 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 ADGRG3Q86Y34 549 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 ZNF563Q8TA94 476 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 MIPOL1Q8TD10 442 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 TUBGCP3Q96CW5 907 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 EXD2Q9NVH0 621 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 SLC35A3Q9Y2D2 325 aa20.67■□□□□ 0.9
CPSF1-202ENST00000527827 ANKRD28O15084 1053 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 LY6HO94772 140 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 GUSBP08236 651 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 ZNF16P17020 682 aaPredicted RBP20.66■□□□□ 0.9
CPSF1-202ENST00000527827 RYKP34925 604 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 EFNA4P52798 201 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 H3F3AP84243 136 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 SLC25A3Q00325 362 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 FUT5Q11128 374 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 AP1ARQ63HQ0 302 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 EMBQ6PCB8 327 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 GRINAQ7Z429 371 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 EIF1ADQ8N9N8 165 aaKnown RBP20.66■□□□□ 0.9
CPSF1-202ENST00000527827 KIF18AQ8NI77 898 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 PROX1Q92786 737 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 ZG16BQ96DA0 208 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 SAP130Q9H0E3 1048 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 LPAR3Q9UBY5 353 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 WDR45Q9Y484 360 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 ATP23Q9Y6H3 246 aa20.66■□□□□ 0.9
CPSF1-202ENST00000527827 OR12D1P0DN82 309 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 USF1P22415 310 aaPredicted RBP20.65■□□□□ 0.9
CPSF1-202ENST00000527827 SERPINB5P36952 375 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 CLK1P49759 484 aaKnown RBP20.65■□□□□ 0.9
CPSF1-202ENST00000527827 C9orf135Q5VTT2 229 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 FRRS1Q6ZNA5 592 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 ARIH2OSQ8N7S6 290 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 XAGE5Q8WWM1 108 aa20.65■□□□□ 0.9
CPSF1-202ENST00000527827 OIT3Q8WWZ8 545 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms