RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 RIMS2Q9UQ26 1411 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 NPIPA5A0A0B4J1W7 369 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 A0A1W2PS29 197 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 VPS37CA5D8V6 355 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR11H12B2RN74 326 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FAM25AB3EWG3 89 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FAM25CB3EWG5 89 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FAM25GB3EWG6 89 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 TSTD3H0UI37 97 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 PHYHO14832 338 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 UBDO15205 165 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 PLIN3O60664 434 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SLC19A2O60779 497 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 RP2O75695 350 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 EIF3GO75821 320 aaKnown RBP eCLIP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CNIH1O95406 144 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 TSPAN13O95857 204 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FAM107AO95990 144 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 EGFP01133 1207 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 C2P06681 752 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 HOXD4P09016 255 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CT62P0C5K7 136 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ZNF182P17025 639 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SERPINA2P20848 420 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 TBXA2RP21731 343 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ANOS1P23352 680 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 GCSHP23434 173 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 PAX6P26367 422 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ADORA1P30542 326 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SSTR1P30872 391 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 S100A7P31151 101 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 GABRA5P31644 462 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FOXN2P32314 431 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 GJC1P36383 396 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CRYBB2P43320 205 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 KIR2DL2P43627 348 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ASPAP45381 313 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 BRCC3P46736 316 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 NUMBP49757 651 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 TAS2R50P59544 299 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 DNAJB13P59910 316 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CDC42P60953 191 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 RAP2BP61225 183 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SLC25A3Q00325 362 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 GTF2BQ00403 316 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 HMGCS1Q01581 520 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 MLLT11Q13015 90 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SELENBP1Q13228 472 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SKP2Q13309 424 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 DOC2BQ14184 412 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 RPE65Q16518 533 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ACKR1Q16570 336 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CALCRLQ16602 461 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CTU2Q2VPK5 515 aaKnown RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 WDR72Q3MJ13 1102 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 GLYR1Q49A26 553 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ZBED5Q49AG3 693 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SAMD4BQ5PRF9 694 aaKnown RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 LY6G6FQ5SQ64 297 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 LPCAT4Q643R3 524 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CCDC144NLQ6NUI1 221 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FAM71F2Q6NXP2 309 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 CEACAM20Q6UY09 585 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ZNF841Q6ZN19 808 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 Q7L0L9 218 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 G2E3Q7L622 706 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 NUFIP2Q7Z417 695 aaKnown RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FAM220AQ7Z4H9 259 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 PARGQ86W56 976 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 TMPRSS12Q86WS5 348 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 RAB43Q86YS6 212 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 IGDCC3Q8IVU1 814 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 RIMKLAQ8IXN7 391 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 LGI3Q8N145 548 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR6V1Q8N148 313 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 MUC20Q8N307 709 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SVOPLQ8N434 492 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ARRDC1Q8N5I2 433 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 BOLLQ8N9W6 283 aaKnown RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 INO80EQ8NBZ0 244 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR11H1Q8NG94 326 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR5L1Q8NGL2 311 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR2T11Q8NH01 316 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR11H2Q8NH07 326 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR4K15Q8NH41 348 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR52I2Q8NH67 350 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 OR14L1PQ8NHC6 308 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ABHD3Q8WU67 409 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 NAT14Q8WUY8 206 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 FAM3CQ92520 227 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 C12orf43Q96C57 262 aaKnown RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 NTNG2Q96CW9 530 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 PELI1Q96FA3 418 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 ZBED6CLQ96FA7 236 aaPredicted RBP3.85□□□□□ -1.79
BRCA1-220ENST00000492859 HPDLQ96IR7 371 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 GPR137Q96N19 417 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 VAT1Q99536 393 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 COPS8Q99627 209 aa3.85□□□□□ -1.79
BRCA1-220ENST00000492859 SDHCQ99643 169 aaPredicted RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms