RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TSPO2Q5TGU0 170 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 RNF165Q6ZSG1 346 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 P2RY8Q86VZ1 359 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 ADGRG3Q86Y34 549 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 RIMKLAQ8IXN7 391 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 ANKS4BQ8N8V4 417 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 FNDC5Q8NAU1 212 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 UBLCP1Q8WVY7 318 aaPredicted RBP7.1□□□□□ -1.27
VIM-202ENST00000421459 APH1AQ96BI3 265 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 FBXO17Q96EF6 278 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 PPP1R36Q96LQ0 422 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 MUS81Q96NY9 551 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 USB1Q9BQ65 265 aaKnown RBP7.1□□□□□ -1.27
VIM-202ENST00000421459 INPP5KQ9BT40 448 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 SOX7Q9BT81 388 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 DUSP26Q9BV47 211 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 CCDC106Q9BWC9 280 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 PRR14Q9BWN1 585 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 NMUR2Q9GZQ4 415 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 SHARPINQ9H0F6 387 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 OR51I1Q9H343 314 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 SERINC1Q9NRX5 453 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 SLC7A10Q9NS82 523 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 ACER3Q9NUN7 267 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 ASB6Q9NWX5 421 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 MOKQ9UQ07 419 aa7.1□□□□□ -1.27
VIM-202ENST00000421459 IGHV4-61A0A0C4DH41 118 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 TLDC2A0PJX2 215 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 TMEM114B3SHH9 223 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 ATP6V1G2-DDX39BF2Z307 99 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 H7C417 338 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 PDLIM1O00151 329 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 AP3D1O14617 1153 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 MRPL33O75394 65 aaKnown RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 STX11O75558 287 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 G6PDP11413 515 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 IMPDH2P12268 514 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 CREB1P16220 341 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 SLC25A16P16260 332 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 CDH2P19022 906 aaPredicted RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 PGCP20142 388 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 USF1P22415 310 aaPredicted RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 PGM1P36871 562 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 EFNA4P52798 201 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 DSCR9P59020 149 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 LGALS3BPQ08380 585 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 CARTPTQ16568 116 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 ARHGAP11BQ3KRB8 267 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 LSM12Q3MHD2 195 aaKnown RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 ATP6AP1LQ52LC2 224 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 HIKESHIQ53FT3 197 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 FAM120AOSQ5T036 256 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 TYW3Q6IPR3 259 aaKnown RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 TNFAIP8L2Q6P589 184 aaPredicted RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 EMBQ6PCB8 327 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 KLHL17Q6TDP4 642 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 CASP12Q6UXS9 341 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 EIF3MQ7L2H7 374 aaKnown RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 ANKRD46Q86W74 232 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 ZNF563Q8TA94 476 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 SFXN5Q8TD22 340 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 XAGE5Q8WWM1 108 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 ST8SIA1Q92185 356 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 CNOT9Q92600 299 aaKnown RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 MSI2Q96DH6 328 aaKnown RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 C1orf159Q96HA4 380 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 SLC35G5Q96KT7 338 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 PPP3R2Q96LZ3 170 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 FOXN4Q96NZ1 517 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 SORCS2Q96PQ0 1159 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 BHLHE41Q9C0J9 482 aaPredicted RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 EML4Q9HC35 981 aaKnown RBP7.09□□□□□ -1.27
VIM-202ENST00000421459 TAS2R16Q9NYV7 291 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 CHRNA9Q9UGM1 479 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 MGAT4BQ9UQ53 548 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 FREM1Q5H8C1 2179 aa7.09□□□□□ -1.27
VIM-202ENST00000421459 ABCA1O95477 2261 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 NBEAL1Q6ZS30 2694 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 RNF103-CHMP3A0A140T963 221 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 LOC100289279A0A1B0GTE1 492 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 TMEM72A0PK05 275 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 ZC3H12DA2A288 527 aaKnown RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 VWC2LB2RUY7 222 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 ITM2AO43736 263 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 NPHS1O60500 1241 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 LYPLA1O75608 230 aaPredicted RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 CPSF4O95639 269 aaKnown RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 PMS2P2O95744 297 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 KRT16P08779 473 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 SRD5A1P18405 259 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 MAPK1P28482 360 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 APOBEC3AP31941 199 aaPredicted RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 APOBEC1P41238 236 aaKnown RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 IDH2P48735 452 aaKnown RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 CSNK2A1P68400 391 aaPredicted RBP7.08□□□□□ -1.28
VIM-202ENST00000421459 PHC1P78364 1004 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 PDK3Q15120 406 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 SWI5Q1ZZU3 235 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 ZNF544Q6NX49 715 aa7.08□□□□□ -1.28
VIM-202ENST00000421459 C16orf62Q7Z3J2 963 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms