RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 C15orf54Q8N8G6 183 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 OR2T11Q8NH01 316 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 PCNPQ8WW12 178 aaKnown RBP3.79□□□□□ -1.8
BRCA1-204ENST00000412061 FCAMRQ8WWV6 532 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 RAB3CQ96E17 227 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 FAHD2AQ96GK7 314 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 ZNF486Q96H40 463 aaPredicted RBP3.79□□□□□ -1.8
BRCA1-204ENST00000412061 ZNF641Q96N77 438 aaPredicted RBP3.79□□□□□ -1.8
BRCA1-204ENST00000412061 TMEM246Q9BRR3 403 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 HINT2Q9BX68 163 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 RAB34Q9BZG1 259 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 TM6SF2Q9BZW4 377 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 NT5DC2Q9H857 520 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 MRPL47Q9HD33 250 aaKnown RBP3.79□□□□□ -1.8
BRCA1-204ENST00000412061 SIX2Q9NPC8 291 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 NANSQ9NR45 359 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 CUTCQ9NTM9 273 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 IFNKQ9P0W0 207 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 STOX2Q9P2F5 926 aaPredicted RBP3.79□□□□□ -1.8
BRCA1-204ENST00000412061 KPTNQ9Y664 436 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 KIAA1210Q9ULL0 1709 aa3.79□□□□□ -1.8
BRCA1-204ENST00000412061 USP47Q96K76 1375 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 KBTBD11-OT1A0A1B0GTJ5 212 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 MSGN1A6NI15 193 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 AIM2O14862 343 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 AIREO43918 545 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 LMX1BO60663 402 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 HCN1O60741 890 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 PFKFB2O60825 505 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 HUS1O60921 280 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 CDC123O75794 336 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 SCELO95171 688 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 S100A6P06703 90 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 CCL2P13500 99 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 BCKDHBP21953 392 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 DCKP27707 260 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 PRDX3P30048 256 aaKnown RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 IFNA8P32881 189 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 SPAM1P38567 509 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 PSMD4P55036 377 aaKnown RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 SELENBP1Q13228 472 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 USF2Q15853 346 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 CCDC6Q16204 474 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 NDUFA9Q16795 377 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 TIGITQ495A1 244 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 WDR25Q64LD2 544 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 SPECC1LQ69YQ0 1117 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 SLC35E4Q6ICL7 350 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 H3F3CQ6NXT2 135 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 ZNF790Q6PG37 636 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 APOOLQ6UXV4 268 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 STAC2Q6ZMT1 411 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 LRRC74BQ6ZQY2 392 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 PRSS48Q7RTY5 328 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 MRPL21Q7Z2W9 205 aaKnown RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 LACC1Q8IV20 430 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 DCUN1D3Q8IWE4 304 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 ST13P4Q8IZP2 240 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 BPIFB2Q8N4F0 458 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 FNDC5Q8NAU1 212 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 FBXO36Q8NEA4 188 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 OR52H1Q8NGJ2 320 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 OR10G8Q8NGN5 311 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 PLPPR1Q8TBJ4 325 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 CA5BP1Q8WTZ4 195 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 FAF2Q96CS3 445 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 ZNF396Q96N95 335 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 OR5B2Q96R09 309 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 TNFRSF13CQ96RJ3 184 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 FRMD8P1Q9BZ68 369 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 PITPNM3Q9BZ71 974 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 MFFQ9GZY8 342 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 RNF41Q9H4P4 317 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 RANBP3Q9H6Z4 567 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 NHEJ1Q9H9Q4 299 aaPredicted RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 MYEF2Q9P2K5 600 aaKnown RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 CLN8Q9UBY8 286 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 RBMX2Q9Y388 322 aaKnown RBP3.78□□□□□ -1.8
BRCA1-204ENST00000412061 MMP24Q9Y5R2 645 aa3.78□□□□□ -1.8
BRCA1-204ENST00000412061 KCNE1BA0A087WTH5 132 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 IGHV2-70DA0A0C4DH43 119 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 A0A0G2JLW4 131 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 TRBV7-9A0A0J9YWB2 115 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 A0A1W2PR80 420 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 RAB19A4D1S5 217 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 LRRIQ3A6PVS8 624 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-204ENST00000412061 ZNF99A8MXY4 864 aaPredicted RBP3.77□□□□□ -1.81
BRCA1-204ENST00000412061 SMIM1B2RUZ4 78 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 E9PQ18 207 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 NPIPB9F8W1W9 429 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 FBP2O00757 339 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 RAB29O14966 203 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 SIVA1O15304 175 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 HPP00738 406 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 IGHG4P01861 327 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 ABOP16442 354 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 OXTRP30559 389 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 MAP3K8P41279 467 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 HMGCS2P54868 508 aa3.77□□□□□ -1.81
BRCA1-204ENST00000412061 RIPK4P57078 832 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms