RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SLCO1B7G3V0H7 640 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 PDLIM1O00151 329 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 CYP7B1O75881 506 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 PAX7P23759 505 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 SERPINF1P36955 418 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 CLK1P49759 484 aaKnown RBP12.1□□□□□ -0.47
VPS29-201ENST00000360579 CHN2P52757 468 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 RPL38P63173 70 aaKnown RBP12.1□□□□□ -0.47
VPS29-201ENST00000360579 SKP2Q13309 424 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 TP53BP2Q13625 1128 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 SPDYE7PQ495Y7 208 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 PDZK1Q5T2W1 519 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 CASP12Q6UXS9 341 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 ZYG11AQ6WRX3 759 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 RNF165Q6ZSG1 346 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 NATD1Q8N6N6 113 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 PSMA8Q8TAA3 256 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 OR5P2Q8WZ92 322 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 C1orf159Q96HA4 380 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 VRK1Q99986 396 aaPredicted RBP12.1□□□□□ -0.47
VPS29-201ENST00000360579 KCNS3Q9BQ31 491 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 BHLHE41Q9C0J9 482 aaPredicted RBP12.1□□□□□ -0.47
VPS29-201ENST00000360579 ACER3Q9NUN7 267 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 GPATCH2Q9NW75 528 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 BAIAP2L1Q9UHR4 511 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 MOKQ9UQ07 419 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 SLC9A8Q9Y2E8 581 aa12.1□□□□□ -0.47
VPS29-201ENST00000360579 TMEM114B3SHH9 223 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 G3V2L1 256 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 PDE5AO76074 875 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 SNUPNO95149 360 aaKnown RBP12.09□□□□□ -0.47
VPS29-201ENST00000360579 CHEK2O96017 543 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 AK1P00568 194 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 CSTAP01040 98 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 ERCC1P07992 297 aaPredicted RBP12.09□□□□□ -0.47
VPS29-201ENST00000360579 ABHD2P08910 425 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 EFNA1P20827 205 aaPredicted RBP12.09□□□□□ -0.47
VPS29-201ENST00000360579 DNAJB13P59910 316 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 SCGB2A2Q13296 93 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 LSM12Q3MHD2 195 aaKnown RBP12.09□□□□□ -0.47
VPS29-201ENST00000360579 RFTN2Q52LD8 501 aaPredicted RBP12.09□□□□□ -0.47
VPS29-201ENST00000360579 CLEC6AQ6EIG7 209 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 BHLHB9Q6PI77 547 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 EIF3MQ7L2H7 374 aaKnown RBP12.09□□□□□ -0.47
VPS29-201ENST00000360579 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.09□□□□□ -0.47
VPS29-201ENST00000360579 LINC01356Q8N9X3 169 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 OR52E4Q8NGH9 312 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 SFXN5Q8TD22 340 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 IFT81Q8WYA0 676 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 RAB1BQ9H0U4 201 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 OBP2BQ9NPH6 170 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 ATAD3AQ9NVI7 634 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 CHRNA9Q9UGM1 479 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 ATP6V1HQ9UI12 483 aa12.09□□□□□ -0.47
VPS29-201ENST00000360579 MGAM2Q2M2H8 2515 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 DUXAA6NLW8 204 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 AZIN1O14977 448 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 SCAMP2O15127 329 aaKnown RBP12.08□□□□□ -0.48
VPS29-201ENST00000360579 EIF1BO60739 113 aaKnown RBP12.08□□□□□ -0.48
VPS29-201ENST00000360579 GLRA3O75311 464 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 URI1O94763 535 aaPredicted RBP12.08□□□□□ -0.48
VPS29-201ENST00000360579 UBTFL6P0CB48 400 aaPredicted RBP12.08□□□□□ -0.48
VPS29-201ENST00000360579 GIFP27352 417 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 GCAP28676 217 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 MPGP29372 298 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 NTF4P34130 210 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 PPOXP50336 477 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 FOXG1P55316 489 aaPredicted RBP12.08□□□□□ -0.48
VPS29-201ENST00000360579 SLC25A3Q00325 362 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 ZNF141Q15928 474 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 C9orf135Q5VTT2 229 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 ANKS4BQ8N8V4 417 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 SGMS2Q8NHU3 365 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 ZNF563Q8TA94 476 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 OIT3Q8WWZ8 545 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 SDF2Q99470 211 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 CCDC106Q9BWC9 280 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 TNFRSF12AQ9NP84 129 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 CA10Q9NS85 328 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 TRAPPC4Q9Y296 219 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 PCDHB14Q9Y5E9 798 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 PTGDR2Q9Y5Y4 395 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 KCNE3Q9Y6H6 103 aa12.08□□□□□ -0.48
VPS29-201ENST00000360579 LSM1O15116 133 aaKnown RBP12.07□□□□□ -0.48
VPS29-201ENST00000360579 STX11O75558 287 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 STAMBPO95630 424 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 CRYAAP02489 173 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 TACSTD2P09758 323 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 BCKDHAP12694 445 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 APEX1P27695 318 aaKnown RBP12.07□□□□□ -0.48
VPS29-201ENST00000360579 MAPK1P28482 360 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 IDH3GP51553 393 aaPredicted RBP12.07□□□□□ -0.48
VPS29-201ENST00000360579 ETF1P62495 437 aaKnown RBP12.07□□□□□ -0.48
VPS29-201ENST00000360579 GPR68Q15743 365 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 EFNB3Q15768 340 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 ZSWIM7Q19AV6 140 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 CCDC153Q494R4 210 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 GALNTL6Q49A17 601 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 GRINAQ7Z429 371 aa12.07□□□□□ -0.48
VPS29-201ENST00000360579 SPATA19Q7Z5L4 167 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms