RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FAM183AA6NL82 134 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 PPP1R3DO95685 299 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 MT-CO3P00414 261 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 CELA2AP08217 269 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 CCNA2P20248 432 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 SLC9A3P48764 834 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 TMED10P49755 219 aaKnown RBP12.21□□□□□ -0.46
HMGB1-202ENST00000339872 CDH11P55287 796 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 FHL1Q13642 323 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 MED22Q15528 200 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 RTL4Q6ZR62 310 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 SLC46A3Q7Z3Q1 461 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 ANKRD13BQ86YJ7 626 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 BBS1Q8NFJ9 593 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 B4GALNT2Q8NHY0 566 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 SLC22A8Q8TCC7 542 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 ELP5Q8TE02 316 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 HGDQ93099 445 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 YIPF6Q96EC8 236 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 RNFT2Q96EX2 444 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 CRELD1Q96HD1 420 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 DDA1Q9BW61 102 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 HINT3Q9NQE9 182 aaKnown RBP12.21□□□□□ -0.46
HMGB1-202ENST00000339872 TOR4AQ9NXH8 423 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 CFAP54Q96N23 3096 aa12.21□□□□□ -0.46
HMGB1-202ENST00000339872 A0A1W2PPW3 197 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 C2orf72A6NCS6 295 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 ADAM10O14672 748 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 PLD2O14939 933 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 OR7A10O76100 309 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 APOL3O95236 402 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 NAGAP17050 411 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 SLC6A6P31641 620 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 MTNR1AP48039 350 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 RPS18P62269 152 aaKnown RBP12.2□□□□□ -0.46
HMGB1-202ENST00000339872 FOXK2Q01167 660 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 GXYLT1Q4G148 440 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 AADACL4Q5VUY2 407 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 FCRLBQ6BAA4 426 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 OR5M10Q6IEU7 315 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 CXXC5Q7LFL8 322 aaKnown RBP12.2□□□□□ -0.46
HMGB1-202ENST00000339872 TIPARPQ7Z3E1 657 aaKnown RBP12.2□□□□□ -0.46
HMGB1-202ENST00000339872 P2RY8Q86VZ1 359 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 CPOQ8IVL8 374 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 C10orf53Q8N6V4 93 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 OR52I1Q8NGK6 324 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 RFKQ969G6 155 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 LGALS12Q96DT0 336 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 ADAM19Q9H013 955 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 GALNT9Q9HCQ5 603 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 PARD6AQ9NPB6 346 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 NCDNQ9UBB6 729 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF337Q9Y3M9 751 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 M0R082 166 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 NDUFB2O95178 105 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 RAB36O95755 333 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 DLGAP3O95886 979 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 HSMCR30P0CW71 290 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 GP1BBP13224 206 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 TCN2P20062 427 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 NOS3P29474 1203 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 EGR4Q05215 589 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 LSAMPQ13449 338 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 QPRTQ15274 297 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 EXT1Q16394 746 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 CSRP2Q16527 193 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 TMEM44Q2T9K0 475 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 COL28A1Q2UY09 1125 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 KLHL22Q53GT1 634 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 NXNL2Q5VZ03 156 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 PLBD1Q6P4A8 553 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF367Q7RTV3 350 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 IGFN1Q86VF2 1251 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 MISPQ8IVT2 679 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 CT55Q8WUE5 264 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 NACC2Q96BF6 587 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 IMMP1LQ96LU5 166 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 OR5M11Q96RB7 305 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 RASL10BQ96S79 203 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 TAPBPLQ9BX59 468 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 C12orf10Q9HB07 376 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 CMC2Q9NRP2 79 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 KLRF1Q9NZS2 232 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 H2AFY2Q9P0M6 372 aaPredicted RBP12.2□□□□□ -0.46
HMGB1-202ENST00000339872 CLEC2DQ9UHP7 191 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 OSGIN1Q9UJX0 560 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 ERGIC3Q9Y282 383 aa12.2□□□□□ -0.46
HMGB1-202ENST00000339872 CACNA1HO95180 2353 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 CCDC187A0A096LP49 1063 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 A0A1W2PNU3 283 aaPredicted RBP12.19□□□□□ -0.46
HMGB1-202ENST00000339872 C9orf172C9J069 976 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 SOCS6O14544 535 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 CDC40O60508 579 aaKnown RBP eCLIP12.19□□□□□ -0.46
HMGB1-202ENST00000339872 CD36P16671 472 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 CXCR1P25024 350 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 TGFBR2P37173 567 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 LIPAP38571 399 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 RAB40BQ12829 278 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 C3orf38Q5JPI3 329 aa12.19□□□□□ -0.46
HMGB1-202ENST00000339872 HES3Q5TGS1 186 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms