RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MXD1Q05195 221 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 CCNIQ14094 377 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 ABCA11PQ4W5N1 156 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 ASB18Q6ZVZ8 466 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 MBOAT2Q6ZWT7 520 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 GALNT16Q8N428 558 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 CPT1CQ8TCG5 803 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 TRUB1Q8WWH5 349 aaKnown RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 WDR34Q96EX3 536 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 BORCS8Q96FH0 119 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 GPN1Q9HCN4 374 aaPredicted RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 NDRG3Q9UGV2 375 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 TCFL5Q9UL49 500 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 PCDHB10Q9UN67 800 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 RASD1Q9Y272 281 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 PEX16Q9Y5Y5 336 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 SCN5AQ14524 2016 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 ZNF814B7Z6K7 855 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 CWF19L1Q69YN2 538 aaKnown RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 ZNF704Q6ZNC4 412 aaPredicted RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 PLCZ1Q86YW0 608 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 CROCCP3Q8IVE0 287 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 OR5J2Q8NH18 312 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 HDAC2Q92769 488 aaKnown RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 TUBA8Q9NY65 449 aaPredicted RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 ING4Q9UNL4 249 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 hCG_2014768A0A024R1R8 64 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 TRAV27A0A087WT01 109 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 DRD5P21918 477 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 ID4P47928 161 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 DSCR4P56555 118 aaPredicted RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 C1orf140Q5VVS0 124 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 CAMKMTQ7Z624 323 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 C11orf24Q96F05 449 aaPredicted RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 SCGB3A2Q96PL1 93 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 PALMDQ9NP74 551 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 OR6C65A6NJZ3 312 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 P2RX6O15547 441 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 PRAMEF10O60809 474 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 CD36P16671 472 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 RBM34P42696 430 aaKnown RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 MLC1Q15049 377 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 MAPK11Q15759 364 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 PELI3Q8N2H9 469 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 SLC16A11Q8NCK7 471 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 SDR9C7Q8NEX9 313 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 MAELQ96JY0 434 aaKnown RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 MRGPRX4Q96LA9 322 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 C12orf49Q9H741 205 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 LRRC42Q9Y546 428 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 ZNF878C9JN71 531 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 NRG2O14511 850 aaPredicted RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 GAPDHSO14556 408 aaPredicted RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 PCYT1AP49585 367 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 MEOX1P50221 254 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 OCLNQ16625 522 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 RNASE12Q5GAN4 147 aaKnown RBP9.37□□□□□ -0.91
USP54-201ENST00000339859 SLC6A19Q695T7 634 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 OR2A2Q6IF42 318 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 C6orf89Q6UWU4 347 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 ACBD7Q8N6N7 88 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 OR9Q2Q8NGE9 314 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 ASB17Q8WXJ9 295 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 SLC35A4Q96G79 324 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 OR52D1Q9H346 318 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 C2orf72A6NCS6 295 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 TNFRSF21O75509 655 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 VAMP5O95183 116 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 GM2AP17900 193 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 DCKP27707 260 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 ARPC4P59998 168 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 SCN1BQ07699 218 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 MESP2Q0VG99 397 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 KCNAB2Q13303 367 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 TNFAIP8L3Q5GJ75 292 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 OR2Y1Q8NGV0 311 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 OR11L1Q8NGX0 322 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 OR2A5Q96R48 311 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 CSF3RQ99062 836 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 GRIP1Q9Y3R0 1128 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 SYT7O43581 403 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 OR7A10O76100 309 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 GLSO94925 669 aaPredicted RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 ATP1B1P05026 303 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 CNN3Q15417 329 aaKnown RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 LRRN1Q6UXK5 716 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 TMEM121BQ9BXQ6 578 aaPredicted RBP9.36□□□□□ -0.91
USP54-201ENST00000339859 TUBB1Q9H4B7 451 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 ANKRA2Q9H9E1 313 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 SNTG1Q9NSN8 517 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 CHRNA9Q9UGM1 479 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 A0A1B0GWA3 101 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 CHP2O43745 196 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 CTSVO60911 334 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 WNT1P04628 370 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 HEXAP06865 529 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 PGAM2P15259 253 aa9.36□□□□□ -0.91
USP54-201ENST00000339859 TBC1D28Q2M2D7 210 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms