RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TMEM212A6NML5 194 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 RTCAO00442 366 aaKnown RBP13.01□□□□□ -0.33
CSPG4-201ENST00000308508 ACSM1Q08AH1 577 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 C4orf17Q53FE4 359 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 MOB1BQ7L9L4 216 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 DEFB132Q7Z7B7 95 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 ARHGAP9Q9BRR9 750 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 NKX6-2Q9C056 277 aaPredicted RBP13.01□□□□□ -0.33
CSPG4-201ENST00000308508 SHPRHQ149N8 1683 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 LRIT2A6NDA9 550 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 NUDT19A8MXV4 375 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 NUDT21O43809 227 aaKnown RBP13.01□□□□□ -0.33
CSPG4-201ENST00000308508 CBR1P16152 277 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 CHADLQ6NUI6 762 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 LPCAT3Q6P1A2 487 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 PSMF1Q92530 271 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 STK19P49842 368 aaPredicted RBP13.01□□□□□ -0.33
CSPG4-201ENST00000308508 ATP1B3P54709 279 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 SRYQ05066 204 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 MBTPS1Q14703 1052 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 TIGD3Q6B0B8 471 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 OR56B1Q8NGI3 324 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 SLC12A9Q9BXP2 914 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 LTN1O94822 1766 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 COCHO43405 550 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 USP2O75604 605 aaPredicted RBP13.01□□□□□ -0.33
CSPG4-201ENST00000308508 DBHP09172 617 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 CD79AP11912 226 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 HMGCLP35914 325 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 FAM189BP81408 668 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 COL9A3Q14050 684 aaPredicted RBP13.01□□□□□ -0.33
CSPG4-201ENST00000308508 FAM160A2Q8N612 972 aaPredicted RBP13.01□□□□□ -0.33
CSPG4-201ENST00000308508 TRAPPC2LH3BP13 241 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 SYN1P17600 705 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 CNKSR3Q6P9H4 555 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 SLC23A2Q9UGH3 650 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 A6NIN4 97 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 NME2P22392 152 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 MC3RP41968 323 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 UBXN10Q96LJ8 280 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 PLEK2Q9NYT0 353 aa13.01□□□□□ -0.33
CSPG4-201ENST00000308508 AQP9O43315 295 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 GPRIN2O60269 458 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 C21orf33P30042 268 aaPredicted RBP13□□□□□ -0.33
CSPG4-201ENST00000308508 PLXDC1Q8IUK5 500 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM151BQ8IW70 566 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 LAX1Q8IWV1 398 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 MKXQ8IYA7 352 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 FBXO27Q8NI29 283 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 FAM122AQ96E09 287 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 SEC22CQ9BRL7 303 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 OLFM2O95897 454 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 BAXQ07812 192 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 SQSTM1Q13501 440 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 RNLSQ5VYX0 342 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 ZC3H3Q8IXZ2 948 aaKnown RBP13□□□□□ -0.33
CSPG4-201ENST00000308508 FRMD1Q8N878 549 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 RPH3ALQ9UNE2 315 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 ETV7Q9Y603 341 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 NSA2O95478 260 aaKnown RBP13□□□□□ -0.33
CSPG4-201ENST00000308508 PNPP00491 289 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 HBQ1P09105 142 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 OMGP23515 440 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 CATR1Q13166 79 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 GPR18Q14330 331 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 CLDN22Q8N7P3 220 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 OR1S2Q8NGQ3 325 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 CDS1Q92903 461 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 GJD2Q9UKL4 321 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 SPO11Q9Y5K1 396 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 H7C1Q1 480 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 RPL13AP40429 203 aaKnown RBP13□□□□□ -0.33
CSPG4-201ENST00000308508 PCBD1P61457 104 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 ARL16Q0P5N6 197 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 LMAN2Q12907 356 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 HTR4Q13639 388 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 SHEQ5VZ18 495 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 VASNQ6EMK4 673 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 HORMAD2Q8N7B1 307 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 INIPQ9NRY2 104 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 VSX1Q9NZR4 365 aaPredicted RBP13□□□□□ -0.33
CSPG4-201ENST00000308508 TO15178 435 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 ADAM23O75077 832 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 OR2C1O95371 312 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 SLC2A1P11166 492 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 SPINT3P49223 89 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 HOXA1P49639 335 aaPredicted RBP13□□□□□ -0.33
CSPG4-201ENST00000308508 BAK1Q16611 211 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 SCARB1Q8WTV0 552 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 PKMYT1Q99640 499 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 UBL3O95164 117 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 GPX3P22352 226 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 ADIRFQ15847 76 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 OR10Z1Q8NGY1 313 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 SLCO5A1Q9H2Y9 848 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 FKRPQ9H9S5 495 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 C11orf97A0A1B0GVM6 126 aaPredicted RBP13□□□□□ -0.33
CSPG4-201ENST00000308508 TXNDC12O95881 172 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 GPLD1P80108 840 aa13□□□□□ -0.33
CSPG4-201ENST00000308508 FPGSQ05932 587 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms