RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 A0A087WUU8 490 aa18■□□□□ 0.47
USP48-201ENST00000308271 TRBV5-4A0A0C4DH59 114 aa18■□□□□ 0.47
USP48-201ENST00000308271 TGM5O43548 720 aa18■□□□□ 0.47
USP48-201ENST00000308271 AIFM1O95831 613 aa18■□□□□ 0.47
USP48-201ENST00000308271 PSMB5P28074 263 aa18■□□□□ 0.47
USP48-201ENST00000308271 FOXK2Q01167 660 aa18■□□□□ 0.47
USP48-201ENST00000308271 LIMS2Q7Z4I7 341 aa18■□□□□ 0.47
USP48-201ENST00000308271 OR7G2Q8NG99 324 aa18■□□□□ 0.47
USP48-201ENST00000308271 MACROD1Q9BQ69 325 aa18■□□□□ 0.47
USP48-201ENST00000308271 FGF20Q9NP95 211 aaPredicted RBP18■□□□□ 0.47
USP48-201ENST00000308271 CRMP1Q14194 572 aa18■□□□□ 0.47
USP48-201ENST00000308271 PGAP1Q75T13 922 aa18■□□□□ 0.47
USP48-201ENST00000308271 OR2A12Q8NGT7 310 aa18■□□□□ 0.47
USP48-201ENST00000308271 ST8SIA4Q92187 359 aa18■□□□□ 0.47
USP48-201ENST00000308271 FOXRED1Q96CU9 486 aaPredicted RBP18■□□□□ 0.47
USP48-201ENST00000308271 LYSMD1Q96S90 227 aa18■□□□□ 0.47
USP48-201ENST00000308271 ARHGAP9Q9BRR9 750 aa18■□□□□ 0.47
USP48-201ENST00000308271 LINC00597Q9H2U6 94 aa18■□□□□ 0.47
USP48-201ENST00000308271 TMEM82A0PJX8 343 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 DCDC2BA2VCK2 349 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 SGK494L7N484 410 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 CDC123O75794 336 aaPredicted RBP17.99■□□□□ 0.47
USP48-201ENST00000308271 ZNF888P0CJ79 500 aaPredicted RBP17.99■□□□□ 0.47
USP48-201ENST00000308271 HOXA9P31269 272 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 SLC6A11P48066 632 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 EXOSC2Q13868 293 aaKnown RBP17.99■□□□□ 0.47
USP48-201ENST00000308271 MRPL2Q5T653 305 aaKnown RBP17.99■□□□□ 0.47
USP48-201ENST00000308271 ZNF585AQ6P3V2 769 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 PAQR8Q8TEZ7 354 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 WDR92Q96MX6 357 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 ARFGEF1Q9Y6D6 1849 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 RFXAPO00287 272 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 ZNF35P13682 527 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 CD53P19397 219 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 PGCP20142 388 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 RAB3AP20336 220 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 KANSL1Q7Z3B3 1105 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 GDF7Q7Z4P5 450 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 SEC22CQ9BRL7 303 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 A0A1W2PQU0 124 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 TYRP1P17643 537 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 CAMLGP49069 296 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 CLDN12P56749 244 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 RPL19P84098 196 aaKnown RBP17.99■□□□□ 0.47
USP48-201ENST00000308271 CTBSQ01459 385 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 BDH1Q02338 343 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 CHST8Q9H2A9 424 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 ZNF701Q9NV72 531 aaPredicted RBP17.99■□□□□ 0.47
USP48-201ENST00000308271 TUBAL3A6NHL2 446 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 B4DGG1 531 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 HLA-AP01891 365 aaKnown RBP17.99■□□□□ 0.47
USP48-201ENST00000308271 TCEAL6Q6IPX3 200 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 OR5H2Q8NGV7 314 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 INTS14Q96SY0 518 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 SLC38A1Q9H2H9 487 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 SLC25A19Q9HC21 320 aa17.99■□□□□ 0.47
USP48-201ENST00000308271 WDPCPO95876 746 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 ZNF765Q7L2R6 523 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 OR5K2Q8NHB8 316 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 SLC2A12Q8TD20 617 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 MYLIPQ8WY64 445 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 MMABQ96EY8 250 aaPredicted RBP17.98■□□□□ 0.47
USP48-201ENST00000308271 ETV7Q9Y603 341 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 SLX4Q8IY92 1834 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 TPOP07202 933 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 TEAD1P28347 426 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 PER3P56645 1201 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 C17orf99Q6UX52 265 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 ZNF704Q6ZNC4 412 aaPredicted RBP17.98■□□□□ 0.47
USP48-201ENST00000308271 ZNF283Q8N7M2 679 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 ZNF565Q8N9K5 539 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 TANKQ92844 425 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 MS4A4AQ96JQ5 239 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 OR14A2Q96R54 314 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 SPNS1Q9H2V7 528 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 CXXC1Q9P0U4 656 aaPredicted RBP17.98■□□□□ 0.47
USP48-201ENST00000308271 ZNF337Q9Y3M9 751 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 KIAA0040Q15053 153 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 DGLUCYQ7Z3D6 616 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 BPIFB2Q8N4F0 458 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 ST6GAL2Q96JF0 529 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 PTCHD1Q96NR3 888 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 SAMD11Q96NU1 681 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 ZFYVE21Q9BQ24 234 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 ZFP57Q9NU63 452 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 GABARAPH6UMI1 98 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 LATO43561 262 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 GDI1P31150 447 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 GPLD1P80108 840 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 ARL6IP1Q15041 203 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 SPIN3Q5JUX0 258 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 TEX261Q6UWH6 196 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 GAREM2Q75VX8 874 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 TMEM255BQ8WV15 326 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 NOX4Q9NPH5 578 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 U3KQ87 197 aa17.98■□□□□ 0.47
USP48-201ENST00000308271 GPR89AB7ZAQ6 455 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 PLPP1O14494 284 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 IFNA17P01571 189 aa17.97■□□□□ 0.47
USP48-201ENST00000308271 GPR89BP0CG08 455 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms