RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ACER3Q9NUN7 267 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 B3GALT5Q9Y2C3 310 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 WDR91A4D1P6 747 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 DUXAA6NLW8 204 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 ZNF724A8MTY0 619 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 GPRIN2O60269 458 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 DNAJA2O60884 412 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 RAD51DO75771 328 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 CPSF4O95639 269 aaKnown RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 TP53P04637 393 aaPredicted RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 THBS1P07996 1170 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 PGCP20142 388 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 COX5AP20674 150 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 NTF4P34130 210 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 SERPINB5P36952 375 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 FOXG1P55316 489 aaPredicted RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 EMX2Q04743 252 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 CHRNEQ04844 493 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 SPOCK1Q08629 439 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 IFFO1Q0D2I5 559 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 ETFDHQ16134 617 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 PDCD2Q16342 344 aaPredicted RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 SYT14P1Q58G82 188 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 TIMM23BQ5SRD1 257 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 TNFAIP8L2Q6P589 184 aaPredicted RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 BHLHB9Q6PI77 547 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 DNAJC14Q6Y2X3 702 aaPredicted RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 EIF3MQ7L2H7 374 aaKnown RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 HOMEZQ8IX15 550 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 PIAS4Q8N2W9 510 aaPredicted RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 ZNF433Q8N7K0 673 aaPredicted RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 OR52N5Q8NH56 324 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 XAGE5Q8WWM1 108 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 ST8SIA1Q92185 356 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 USB1Q9BQ65 265 aaKnown RBP14.25□□□□□ -0.13
CLN3-246ENST00000636228 C1QTNF6Q9BXI9 259 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 ZNF350Q9GZX5 532 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 AKTIPQ9H8T0 292 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 LGALS13Q9UHV8 139 aa14.25□□□□□ -0.13
CLN3-246ENST00000636228 OR5H1A6NKK0 313 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 CCT8L1PA6NM43 557 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 CLDN24A6NM45 220 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 E7EQL1 145 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 PGM1P36871 562 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 ZNF83P51522 516 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 CSNK2A1P68400 391 aaPredicted RBP14.24□□□□□ -0.13
CLN3-246ENST00000636228 PHC1P78364 1004 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 ABLIM2Q6H8Q1 611 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 TYW3Q6IPR3 259 aaKnown RBP14.24□□□□□ -0.13
CLN3-246ENST00000636228 DNM1P46Q6ZS02 220 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 MTDHQ86UE4 582 aaKnown RBP14.24□□□□□ -0.13
CLN3-246ENST00000636228 CCDC103Q8IW40 242 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 ZNF563Q8TA94 476 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 TMEM234Q8WY98 164 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 ARL5BQ96KC2 179 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 OR11A1Q9GZK7 315 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 EXD2Q9NVH0 621 aa14.24□□□□□ -0.13
CLN3-246ENST00000636228 NOP53Q9NZM5 478 aaKnown RBP14.24□□□□□ -0.13
CLN3-246ENST00000636228 NOSIPQ9Y314 301 aaKnown RBP14.24□□□□□ -0.13
CLN3-246ENST00000636228 IGHV4-30-2A0A087WSY4 118 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 CIB4A0PJX0 185 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 PRAMEF27A3QJZ7 478 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 ZNF716A6NP11 495 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 CD5LO43866 347 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 SCN2BO60939 215 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 PGM3O95394 542 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 AK1P00568 194 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 NUDT17P0C025 328 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 ETV4P43268 484 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 IRX1P78414 480 aaPredicted RBP14.23□□□□□ -0.13
CLN3-246ENST00000636228 FUT5Q11128 374 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 MAD2L1Q13257 205 aaPredicted RBP14.23□□□□□ -0.13
CLN3-246ENST00000636228 FBXW9Q5XUX1 488 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 HMBOX1Q6NT76 420 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 DTX2Q86UW9 622 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 NUDCD3Q8IVD9 361 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 RIBC1Q8N443 379 aaPredicted RBP14.23□□□□□ -0.13
CLN3-246ENST00000636228 ZNF781Q8N8C0 355 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 SPATA3Q8NHX4 192 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 CCDC106Q9BWC9 280 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 REPIN1Q9BWE0 567 aaKnown RBP14.23□□□□□ -0.13
CLN3-246ENST00000636228 CACNG6Q9BXT2 260 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 DPY30Q9C005 99 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 PCDHGB4Q9UN71 923 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 WDR45Q9Y484 360 aa14.23□□□□□ -0.13
CLN3-246ENST00000636228 IGKV3D-15A0A087WSY6 115 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 RNASET2O00584 256 aaKnown RBP14.22□□□□□ -0.13
CLN3-246ENST00000636228 TYROBPO43914 113 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 KIAA0513O60268 411 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 UQCRC2P22695 453 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 APOBEC1P41238 236 aaKnown RBP14.22□□□□□ -0.13
CLN3-246ENST00000636228 OR2B6P58173 313 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 VSNL1P62760 191 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 PLAURQ03405 335 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 C9orf135Q5VTT2 229 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 SLC22A25Q6T423 547 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 FRRS1Q6ZNA5 592 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 ADGRG3Q86Y34 549 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 OR52E4Q8NGH9 312 aa14.22□□□□□ -0.13
CLN3-246ENST00000636228 MIPOL1Q8TD10 442 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms