RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 KLHL28Q9NXS3 571 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 DNAJB9Q9UBS3 223 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 SLC9A8Q9Y2E8 581 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 TESMINQ9Y4I5 508 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 ENPP4Q9Y6X5 453 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 ZFHX3Q15911 3703 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 CDHR4A6H8M9 788 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 PINLYPA6NC86 204 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 FIGNL2A6NMB9 653 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 FAM166BA8MTA8 275 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 NPIPA2E9PIF3 369 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 NPIPA3F8WFD2 350 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 SCDO00767 359 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 BCKDKO14874 412 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 OR6B1O95007 311 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 GKN3PP0CG01 181 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 ACVR2AP27037 513 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 RRM2P31350 389 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 SOX3P41225 446 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 FBXW4P57775 412 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 PSPHP78330 225 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 HOXC5Q00444 222 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 SPIBQ01892 262 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 GANABQ14697 944 aaKnown RBP11.5□□□□□ -0.57
UPF1-208ENST00000600012 CD226Q15762 336 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 NDUFAF6Q330K2 333 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 GXYLT1Q4G148 440 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 OR2T5Q6IEZ7 315 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 IL20RBQ6UXL0 311 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 APOOLQ6UXV4 268 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 TSPYL5Q86VY4 417 aaPredicted RBP11.5□□□□□ -0.57
UPF1-208ENST00000600012 TMEM200AQ86VY9 491 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 EPHX4Q8IUS5 362 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 OR2T29Q8NH02 315 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 CNOT9Q92600 299 aaKnown RBP11.5□□□□□ -0.57
UPF1-208ENST00000600012 CENPNQ96H22 339 aaPredicted RBP11.5□□□□□ -0.57
UPF1-208ENST00000600012 PRR14Q9BWN1 585 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 TTTY12Q9BZ98 90 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 HOXD1Q9GZZ0 328 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 NTN4Q9HB63 628 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 UBQLN4Q9NRR5 601 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.5□□□□□ -0.57
UPF1-208ENST00000600012 DNAJB12Q9NXW2 375 aaKnown RBP11.5□□□□□ -0.57
UPF1-208ENST00000600012 DTNAQ9Y4J8 743 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 ARHGAP21Q5T5U3 1957 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 MPDZO75970 2070 aa11.5□□□□□ -0.57
UPF1-208ENST00000600012 A0A0G2JMM0 328 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 A0A1W2PPB8 328 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 A0A1W2PRS3 328 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 SERINC4A6NH21 518 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 OR6C70A6NIJ9 312 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 KIR3DP1A8MWS1 328 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 OIP5O43482 229 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 SCO2O43819 266 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 GLSO94925 669 aaPredicted RBP11.49□□□□□ -0.57
UPF1-208ENST00000600012 PRSS23O95084 383 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 IGHG3P01860 377 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 PRG2P13727 222 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 HPGDP15428 266 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 ZNF23P17027 643 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 ITGA2P17301 1181 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 CNR1P21554 472 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 TBXA2RP21731 343 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 FUT4P22083 530 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 LCN1P31025 176 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 ART1P52961 327 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 FOXD4Q12950 439 aaPredicted RBP11.49□□□□□ -0.57
UPF1-208ENST00000600012 MYBPHQ13203 477 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 EFR3AQ14156 821 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 KRTAP21-3Q3LHN1 58 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 KLHL26Q53HC5 615 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 OGFRL1Q5TC84 451 aaPredicted RBP11.49□□□□□ -0.57
UPF1-208ENST00000600012 FNDC7Q5VTL7 733 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 RTL4Q6ZR62 310 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 TMEM179BQ7Z7N9 219 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 LSRQ86X29 649 aaPredicted RBP11.49□□□□□ -0.57
UPF1-208ENST00000600012 FAM109AQ8N4B1 249 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 ZNF527Q8NB42 609 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 HGDQ93099 445 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 SGCZQ96LD1 299 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 NODALQ96S42 347 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 PIP5K1AQ99755 562 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 CIB1Q99828 191 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 FAM173AQ9BQD7 235 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 TACO1Q9BSH4 297 aaKnown RBP11.49□□□□□ -0.57
UPF1-208ENST00000600012 BDH2Q9BUT1 245 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 RTN4RQ9BZR6 473 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 PNPLA3Q9NST1 481 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 RHCGQ9UBD6 479 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 OAZ3Q9UMX2 235 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 FAM32AQ9Y421 112 aaKnown RBP11.49□□□□□ -0.57
UPF1-208ENST00000600012 U3KQV3 271 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 ABCA4P78363 2273 aa11.49□□□□□ -0.57
UPF1-208ENST00000600012 ITPR3Q14573 2671 aa11.48□□□□□ -0.57
UPF1-208ENST00000600012 A0A1B0GVC2 190 aa11.48□□□□□ -0.57
UPF1-208ENST00000600012 CPSF4LA6NMK7 179 aaKnown RBP11.48□□□□□ -0.57
UPF1-208ENST00000600012 C17orf51A8MQB3 221 aa11.48□□□□□ -0.57
UPF1-208ENST00000600012 PDLIM1O00151 329 aa11.48□□□□□ -0.57
UPF1-208ENST00000600012 AP3D1O14617 1153 aa11.48□□□□□ -0.57
UPF1-208ENST00000600012 FFAR1O14842 300 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms