RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 OVOL3O00110 214 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 LYZL6O75951 148 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 AK1P00568 194 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 YES1P07947 543 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 SOD3P08294 240 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 ALDOCP09972 364 aaKnown RBP16.82■□□□□ 0.28
VPS35-202ENST00000561713 RYKP34925 604 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 KHKP50053 298 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 RPL14P50914 215 aaKnown RBP16.82■□□□□ 0.28
VPS35-202ENST00000561713 STK11Q15831 433 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 FAM174BQ3ZCQ3 159 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 SFRP5Q5T4F7 317 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 SAXO2Q658L1 398 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 SEZ6L2Q6UXD5 910 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 ANKRD42Q8N9B4 389 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 STEAP2Q8NFT2 490 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 KBTBD8Q8NFY9 601 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 XAGE5Q8WWM1 108 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 KISS1RQ969F8 398 aaPredicted RBP16.82■□□□□ 0.28
VPS35-202ENST00000561713 ROPN1LQ96C74 230 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 TEX37Q96LM6 180 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 ZIM3Q96PE6 472 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 SLC35A5Q9BS91 424 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 KCNK9Q9NPC2 374 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 EXD2Q9NVH0 621 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 KLHL9Q9P2J3 617 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 PCDHGB4Q9UN71 923 aa16.82■□□□□ 0.28
VPS35-202ENST00000561713 E9PBE3 544 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 ETV2O00321 342 aaPredicted RBP16.81■□□□□ 0.28
VPS35-202ENST00000561713 TM9SF1O15321 606 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 BIRC5O15392 142 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 TP53P04637 393 aaPredicted RBP16.81■□□□□ 0.28
VPS35-202ENST00000561713 UQCRC2P22695 453 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 CHI3L1P36222 383 aaPredicted RBP16.81■□□□□ 0.28
VPS35-202ENST00000561713 PGM1P36871 562 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 DIO1P49895 249 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 RAC3P60763 192 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 RASGEF1BQ0VAM2 473 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 BST1Q10588 318 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 SMU1Q2TAY7 513 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 ATAD3BQ5T9A4 648 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 ADAM5Q6NVV9 412 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 DNAJC14Q6Y2X3 702 aaPredicted RBP16.81■□□□□ 0.28
VPS35-202ENST00000561713 EIF3MQ7L2H7 374 aaKnown RBP16.81■□□□□ 0.28
VPS35-202ENST00000561713 BHLHA15Q7RTS1 189 aaPredicted RBP16.81■□□□□ 0.28
VPS35-202ENST00000561713 FAM71CQ8NEG0 241 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 MIPOL1Q8TD10 442 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 ST8SIA1Q92185 356 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 ZG16BQ96DA0 208 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 INPP5KQ9BT40 448 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 BCO1Q9HAY6 547 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 CTPS2Q9NRF8 586 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 MARCOQ9UEW3 520 aaPredicted RBP16.81■□□□□ 0.28
VPS35-202ENST00000561713 RNF115Q9Y4L5 304 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 ABCA1O95477 2261 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 SVEP1Q4LDE5 3571 aa16.81■□□□□ 0.28
VPS35-202ENST00000561713 DUXAA6NLW8 204 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 SDHDO14521 159 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 CYTIPO60759 359 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 ADAM11O75078 769 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 IGHV3-9P01782 118 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 DANCRP0C864 163 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 TFPIP10646 304 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 LBPP18428 481 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 CCNA2P20248 432 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 IDUAP35475 653 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 ACVR1BP36896 505 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 CDKN1AP38936 164 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 CDKN2CP42773 168 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 OR3A2P47893 321 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 UFM1P61960 85 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 HPCAP84074 193 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 CASP8Q14790 479 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 GPAT3Q53EU6 434 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 SYT14P1Q58G82 188 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 PODNL1Q6PEZ8 512 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 RNF130Q86XS8 419 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 PNPT1Q8TCS8 783 aaKnown RBP16.8■□□□□ 0.28
VPS35-202ENST00000561713 TESCQ96BS2 214 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 NEURL3Q96EH8 262 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 TRMT61AQ96FX7 289 aaKnown RBP16.8■□□□□ 0.28
VPS35-202ENST00000561713 POTEKPQ9BYX7 375 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 OR11A1Q9GZK7 315 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 OR10A4Q9H209 315 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 SSU72Q9NP77 194 aaKnown RBP16.8■□□□□ 0.28
VPS35-202ENST00000561713 YAE1D1Q9NRH1 226 aa16.8■□□□□ 0.28
VPS35-202ENST00000561713 MAGED1Q9Y5V3 778 aaPredicted RBP16.8■□□□□ 0.28
VPS35-202ENST00000561713 GOLGA8QA0A0J9YX86 632 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 PRSS51A0A1B0GVH4 220 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 GOLGA8OA6NCC3 632 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 GOLGA8NF8WBI6 632 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 AP3D1O14617 1153 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 CD5LO43866 347 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 DNAJA2O60884 412 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 IFNA2P01563 188 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 PGCP20142 388 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 IL12AP29459 219 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 S100A3P33764 101 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 CHRNEQ04844 493 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 BSPH1Q075Z2 132 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms