RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 SPATA19Q7Z5L4 167 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 ADGRG3Q86Y34 549 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 LRRC34Q8IZ02 419 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 PERPQ96FX8 193 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 AURKBQ96GD4 344 aaPredicted RBP15.73■□□□□ 0.11
HDDC3-205ENST00000559898 POM121Q96HA1 1249 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 MAELQ96JY0 434 aaKnown RBP15.73■□□□□ 0.11
HDDC3-205ENST00000559898 PANX1Q96RD7 426 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 CCL19Q99731 98 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 EDARQ9UNE0 448 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 ARID1AO14497 2285 aa15.73■□□□□ 0.11
HDDC3-205ENST00000559898 GJE1A6NN92 205 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 CYTIPO60759 359 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 SNUPNO95149 360 aaKnown RBP15.72■□□□□ 0.11
HDDC3-205ENST00000559898 PGCP20142 388 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 FOXG1P55316 489 aaPredicted RBP15.72■□□□□ 0.11
HDDC3-205ENST00000559898 KCNJ10P78508 379 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 RASGEF1BQ0VAM2 473 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 TAB1Q15750 504 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 SFRP5Q5T4F7 317 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 ATAD3BQ5T9A4 648 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 C3orf33Q6P1S2 294 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 ZNF704Q6ZNC4 412 aaPredicted RBP15.72■□□□□ 0.11
HDDC3-205ENST00000559898 VPS37AQ8NEZ2 397 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 ST8SIA1Q92185 356 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 REXO5Q96IC2 774 aaKnown RBP15.72■□□□□ 0.11
HDDC3-205ENST00000559898 MANSC1Q9H8J5 431 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 BCO1Q9HAY6 547 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 TIGARQ9NQ88 270 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 GPR52Q9Y2T5 361 aa15.72■□□□□ 0.11
HDDC3-205ENST00000559898 SMPD2O60906 423 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 LYZL6O75951 148 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 IGHV3-9P01782 118 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 TFPIP10646 304 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 ETFAP13804 333 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 IDH2P48735 452 aaKnown RBP15.71■□□□□ 0.11
HDDC3-205ENST00000559898 DPY19L1Q2PZI1 675 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 SYT14P1Q58G82 188 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 BEX5Q5H9J7 111 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 RPS26P11Q5JNZ5 115 aaPredicted RBP15.71■□□□□ 0.11
HDDC3-205ENST00000559898 GTF2IRD2BQ6EKJ0 949 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 TMPPEQ6ZT21 453 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 GTF2IRD2Q86UP8 949 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 CCDC103Q8IW40 242 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 ZNF563Q8TA94 476 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 VPS33AQ96AX1 596 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 TMEM204Q9BSN7 226 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 RSPO3Q9BXY4 272 aaPredicted RBP15.71■□□□□ 0.11
HDDC3-205ENST00000559898 RLIMQ9NVW2 624 aa15.71■□□□□ 0.11
HDDC3-205ENST00000559898 NIPBLQ6KC79 2804 aaeCLIP15.7■□□□□ 0.1
HDDC3-205ENST00000559898 TMEM72A0PK05 275 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 ZC3H12DA2A288 527 aaKnown RBP15.7■□□□□ 0.1
HDDC3-205ENST00000559898 TRIM64A6NGJ6 449 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 TRIM64BA6NI03 449 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 AGAP5A6NIR3 686 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 ZNF716A6NP11 495 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 SULT2B1O00204 365 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 GUSBP08236 651 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 PABPC4LP0CB38 370 aaKnown RBP15.7■□□□□ 0.1
HDDC3-205ENST00000559898 RPS4Y1P22090 263 aaKnown RBP15.7■□□□□ 0.1
HDDC3-205ENST00000559898 IGHV1-2P23083 117 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 OR3A2P47893 321 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 PDCD4Q53EL6 469 aaKnown RBP15.7■□□□□ 0.1
HDDC3-205ENST00000559898 ABLIM2Q6H8Q1 611 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 STK32CQ86UX6 486 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 VRK2Q86Y07 508 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 Q96MF0 132 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 TRNT1Q96Q11 434 aaKnown RBP15.7■□□□□ 0.1
HDDC3-205ENST00000559898 POLE3Q9NRF9 147 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.7■□□□□ 0.1
HDDC3-205ENST00000559898 SLC35A3Q9Y2D2 325 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 CHST2Q9Y4C5 530 aa15.7■□□□□ 0.1
HDDC3-205ENST00000559898 TRPC5OSA6NMA1 111 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 SLC22A3O75751 556 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 AGR2O95994 175 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 NUDT7P0C024 238 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 GKN3PP0CG01 181 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 IMPDH2P12268 514 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 PPP3CBP16298 524 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 CROCCP2Q86T23 111 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 ARFGAP2Q8N6H7 521 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 AKAP1Q92667 903 aaKnown RBP eCLIP15.69■□□□□ 0.1
HDDC3-205ENST00000559898 PIP5K1AQ99755 562 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 CHRNA9Q9UGM1 479 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 OSGIN1Q9UJX0 560 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 USF3Q68DE3 2245 aa15.69■□□□□ 0.1
HDDC3-205ENST00000559898 TMED7-TICAM2A0A0A6YYA0 188 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 DPRXA6NFQ7 191 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 RFXANKO14593 260 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 NR2F1P10589 423 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 PRG2P13727 222 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 PTH2RP49190 550 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 SLC18A1P54219 525 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 MRPL2Q5T653 305 aaKnown RBP15.68■□□□□ 0.1
HDDC3-205ENST00000559898 ATG16L1Q676U5 607 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 ZNF836Q6ZNA1 936 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 LRRC74BQ6ZQY2 392 aa15.68■□□□□ 0.1
HDDC3-205ENST00000559898 BHLHA15Q7RTS1 189 aaPredicted RBP15.68■□□□□ 0.1
HDDC3-205ENST00000559898 YTHDF3Q7Z739 585 aaKnown RBP15.68■□□□□ 0.1
HDDC3-205ENST00000559898 P3H2Q8IVL5 708 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms