RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SLC38A4Q969I6 547 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 SPACA9Q96E40 222 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-208ENST00000553868 ALPK1Q96QP1 1244 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 SECISBP2Q96T21 854 aaKnown RBP13.18□□□□□ -0.3
SHMT2-208ENST00000553868 LAT2Q9GZY6 243 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 CDCP1Q9H5V8 836 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 SDHAF3Q9NRP4 125 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 ACER3Q9NUN7 267 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 VNN3Q9NY84 501 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 SELENONQ9NZV5 590 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 PDP1Q9P0J1 537 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-208ENST00000553868 ABI3Q9P2A4 366 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 RPS6KB2Q9UBS0 482 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 CSPG4Q6UVK1 2322 aa13.18□□□□□ -0.3
SHMT2-208ENST00000553868 CPSF4LA6NMK7 179 aaKnown RBP13.17□□□□□ -0.3
SHMT2-208ENST00000553868 KIAA1324LA8MWY0 1029 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-208ENST00000553868 FFAR1O14842 300 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 FADS1O60427 444 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 CELA2AP08217 269 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 ANXA8P13928 327 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 IFNGR2P38484 337 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 RAD23AP54725 363 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 FBXW4P57775 412 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 Q0VFX4 171 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 PIN1Q13526 163 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-208ENST00000553868 MEP1AQ16819 746 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 MICAQ29983 383 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 EXOC3L2Q2M3D2 409 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 DCAF10Q5QP82 559 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 LYPD8Q6UX82 237 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 Q71RC1 249 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-208ENST00000553868 TMEM156Q8N614 296 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 TMCO5AQ8N6Q1 288 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 ATG16L2Q8NAA4 619 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 OR10G2Q8NGC3 310 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 OR52J3Q8NH60 311 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 MAGEE2Q8TD90 523 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-208ENST00000553868 ADAMTS16Q8TE57 1224 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 SLC41A3Q96GZ6 507 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 ZNF597Q96LX8 424 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 SLC29A1Q99808 456 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 PSD2Q9BQI7 771 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 ZNF556Q9HAH1 456 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 MCCC2Q9HCC0 563 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 KRCC1Q9NPI7 259 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-208ENST00000553868 FLRT3Q9NZU0 649 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 RHCGQ9UBD6 479 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 NBEAL1Q6ZS30 2694 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 CACNA1CQ13936 2221 aa13.17□□□□□ -0.3
SHMT2-208ENST00000553868 TRGV8A0A0C4DH27 118 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 CDK2AP1O14519 115 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 ANGPTL1O95841 491 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 LINGO3P0C6S8 592 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 GKN3PP0CG01 181 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 ACADSP16219 412 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 KLK2P20151 261 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 LIMS1P48059 325 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 AQP4P55087 323 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 SUMO3P55854 103 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-208ENST00000553868 PPP2R2BQ00005 443 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 C17orf67Q0P5P2 114 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 OR1Q1Q15612 314 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 ZNF791Q3KP31 576 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-208ENST00000553868 SWT1Q5T5J6 900 aaKnown RBP13.16□□□□□ -0.3
SHMT2-208ENST00000553868 RRM2BQ7LG56 351 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 TMEM179BQ7Z7N9 219 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 GALNT16Q8N428 558 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 LSMEM1Q8N8F7 131 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 GATSQ8NAP1 163 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 OR5M3Q8NGP4 307 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 C14orf79Q96F83 325 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 THOC3Q96J01 351 aaKnown RBP13.16□□□□□ -0.3
SHMT2-208ENST00000553868 SGCZQ96LD1 299 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 SLX1AQ9BQ83 275 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 WFDC6Q9BQY6 131 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 OSBPL11Q9BXB4 747 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 LHPPQ9H008 270 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 METTL7AQ9H8H3 244 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 HPF1Q9NWY4 346 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 SMPD3Q9NY59 655 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-208ENST00000553868 KLRF1Q9NZS2 232 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 ENOPH1Q9UHY7 261 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 SH3BGRL2Q9UJC5 107 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 C15orf41Q9Y2V0 281 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 LRRC42Q9Y546 428 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 CCDC88CQ9P219 2028 aa13.16□□□□□ -0.3
SHMT2-208ENST00000553868 CCL21O00585 134 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 HCRTR2O43614 444 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 SCO2O43819 266 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 ALPLP05186 524 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 PRG2P13727 222 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 PGCP20142 388 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 IGFBP5P24593 272 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 SOX3P41225 446 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 ACAA2P42765 397 aaKnown RBP13.15□□□□□ -0.3
SHMT2-208ENST00000553868 RNF144AP50876 292 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-208ENST00000553868 HOXC5Q00444 222 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 PPP1R8Q12972 351 aaKnown RBP13.15□□□□□ -0.3
SHMT2-208ENST00000553868 SKP2Q13309 424 aa13.15□□□□□ -0.3
SHMT2-208ENST00000553868 SNTA1Q13424 505 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms