RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 ATP6V1C1P21283 382 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 HNRNPA2B1P22626 353 aaKnown RBP2.53□□□□□ -2
SCFD1-210ENST00000553693 FCARP24071 287 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 HOXD10P28358 340 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 PTPN4P29074 926 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 AXLP30530 894 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 IL2RGP31785 369 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 PRDX2P32119 198 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 SLC6A8P48029 635 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 GNB2P62879 340 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 HERVK_113P63132 956 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 ERVK-8P63133 956 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 MECOMQ03112 1051 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 BNIP1Q12981 228 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 VGLL4Q14135 290 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 AGKQ53H12 422 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 HSP90AB3PQ58FF7 597 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 STEAP1BQ6NZ63 245 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 ARMCX2Q7L311 632 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 TMEM110Q86TL2 294 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 LUZP1Q86V48 1076 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 AMZ2Q86W34 360 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 LINC00518Q8N0U6 118 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 PYROXD2Q8N2H3 581 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 IPMKQ8NFU5 416 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 TMEM45BQ96B21 275 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 VPS35Q96QK1 796 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 TSPAN18Q96SJ8 248 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 CDX2Q99626 313 aaPredicted RBP2.53□□□□□ -2
SCFD1-210ENST00000553693 ZNF184Q99676 751 aaPredicted RBP2.53□□□□□ -2
SCFD1-210ENST00000553693 GPR174Q9BXC1 333 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 ERVK-6Q9BXR3 956 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 NT5C3AQ9H0P0 336 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 ZNF702PQ9H963 129 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 ATXN10Q9UBB4 475 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 TUBGCP4Q9UGJ1 667 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 DIMT1Q9UNQ2 313 aaKnown RBP2.53□□□□□ -2
SCFD1-210ENST00000553693 MFHAS1Q9Y4C4 1052 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 LAMB1P07942 1786 aa2.53□□□□□ -2
SCFD1-210ENST00000553693 DDX60Q8IY21 1712 aaKnown RBP2.53□□□□□ -2
SCFD1-210ENST00000553693 MYO3BQ8WXR4 1341 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 C15orf38-AP3S2A0A0A6YYH1 394 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 IGKV6-21A0A0C4DH24 114 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 A0A1B0GWJ7 208 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 SLC17A2O00624 439 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 CYB561D2O14569 222 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 RIPK2O43353 540 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 LCMT2O60294 686 aaKnown RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 LRP3O75074 770 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 MTX2O75431 263 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 KIAA0754O94854 1291 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 SLC2A10O95528 541 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 TXNDC12O95881 172 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 UGT2B4P06133 528 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 H2AFZP0C0S5 128 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 SLC35G4P0C7Q5 338 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 GSTT2P0CG29 244 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 GSTT2BP0CG30 244 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 RPA2P15927 270 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 PSMA2P25787 234 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 DPP4P27487 766 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 NPY2RP49146 381 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 HNMTP50135 292 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 GBX2P52951 348 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 IL9RQ01113 521 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 ZKSCAN8Q15776 578 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 CLPPQ16740 277 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 PARP6Q2NL67 630 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 ZNF311Q5JNZ3 666 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 LIPKQ5VXJ0 399 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 SULT1C3Q6IMI6 304 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 PMF1Q6P1K2 205 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 SCYL2Q6P3W7 929 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 CENPUQ71F23 418 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 LRRC70Q7Z2Q7 622 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 TGIF2LYQ8IUE0 185 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 MKXQ8IYA7 352 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 GPR65Q8IYL9 337 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 NFAM1Q8NET5 270 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 ZNF397Q8NF99 534 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 CTNNBL1Q8WYA6 563 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 TADA1Q96BN2 335 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 CCDC51Q96ER9 411 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 HPDLQ96IR7 371 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 ELMO2Q96JJ3 720 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 NDUFAF3Q9BU61 184 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 CCSER1Q9C0I3 900 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 COA1Q9GZY4 146 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 DCTPP1Q9H773 170 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 TDRD3Q9H7E2 651 aaKnown RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 RMND5AQ9H871 391 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 HPCAL4Q9UM19 191 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 PDE10AQ9Y233 779 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 ALPK3Q96L96 1907 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 MUC3AQ02505 3323 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 COL1A1P02452 1464 aaPredicted RBP2.52□□□□□ -2.01
SCFD1-210ENST00000553693 PSME4Q14997 1843 aa2.52□□□□□ -2.01
SCFD1-210ENST00000553693 MED23Q9ULK4 1368 aa2.51□□□□□ -2.01
SCFD1-210ENST00000553693 NPIPA5A0A0B4J1W7 369 aa2.51□□□□□ -2.01
SCFD1-210ENST00000553693 A0A0J9YVX5 310 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms