RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SMPDL3BQ92485 455 aa19.14■□□□□ 0.65
VPS29-206ENST00000549578 ABTB1Q969K4 478 aaPredicted RBP19.14■□□□□ 0.65
VPS29-206ENST00000549578 SLC47A1Q96FL8 570 aa19.14■□□□□ 0.65
VPS29-206ENST00000549578 ADAM19Q9H013 955 aa19.14■□□□□ 0.65
VPS29-206ENST00000549578 OSGIN1Q9UJX0 560 aa19.14■□□□□ 0.65
VPS29-206ENST00000549578 NPIPA2E9PIF3 369 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 NPIPA3F8WFD2 350 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 J3KTA2 159 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 hCG_2039718K7EN88 272 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 OPN1LWP04000 364 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 CCNA2P20248 432 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 POLR2HP52434 150 aaKnown RBP19.13■□□□□ 0.65
VPS29-206ENST00000549578 VLDLRP98155 873 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 NHSL2Q5HYW2 709 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 VASNQ6EMK4 673 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 ATP6V1C2Q8NEY4 427 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 ADAMTS16Q8TE57 1224 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 C7orf34Q96L11 122 aa19.13■□□□□ 0.65
VPS29-206ENST00000549578 TMED7-TICAM2A0A0A6YYA0 188 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 A0A0B4J2E0 115 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 A0A1B0GX12 115 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 ANKRD65E5RJM6 399 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 ACTL6AO96019 429 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 NQO1P15559 274 aaKnown RBP19.12■□□□□ 0.65
VPS29-206ENST00000549578 POU3F2P20265 443 aaPredicted RBP19.12■□□□□ 0.65
VPS29-206ENST00000549578 ELK4P28324 431 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 APOBEC1P41238 236 aaKnown RBP19.12■□□□□ 0.65
VPS29-206ENST00000549578 HTR3AP46098 478 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 LHX2P50458 406 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 PIN1Q13526 163 aaPredicted RBP19.12■□□□□ 0.65
VPS29-206ENST00000549578 C3AR1Q16581 482 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 ALG10BQ5I7T1 473 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 ADGRG3Q86Y34 549 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 RNF217Q8TC41 542 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 TIMP4Q99727 224 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 NDUFAF4Q9P032 175 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 TMED7Q9Y3B3 224 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 NBASA2RRP1 2371 aa19.12■□□□□ 0.65
VPS29-206ENST00000549578 MT-ND1P03886 318 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 THY1P04216 161 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 SHC1P29353 583 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 PTGS2P35354 604 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 CDH12P55289 794 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 TAS2R41P59536 307 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 SELENBP1Q13228 472 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 ZNF613Q6PF04 617 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 ATG4DQ86TL0 474 aaPredicted RBP19.11■□□□□ 0.65
VPS29-206ENST00000549578 ZGRF1Q86YA3 2104 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 UBQLNLQ8IYU4 475 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 ADGRG5Q8IZF4 528 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 LILRA2Q8N149 483 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 ST6GALNAC3Q8NDV1 305 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 DNAJA4Q8WW22 397 aaPredicted RBP19.11■□□□□ 0.65
VPS29-206ENST00000549578 SARAFQ96BY9 339 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 RAB3IPQ96QF0 476 aaPredicted RBP19.11■□□□□ 0.65
VPS29-206ENST00000549578 CHRNA9Q9UGM1 479 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 PRDM4Q9UKN5 801 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 ACAD8Q9UKU7 415 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 A4GNTQ9UNA3 340 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 ENPP4Q9Y6X5 453 aa19.11■□□□□ 0.65
VPS29-206ENST00000549578 TCRBV3S1A0A5B6 114 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 DHRS12A0PJE2 317 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 TRAPPC13A5PLN9 417 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 OR14I1A6ND48 311 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 H0YC42 278 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 LINC01387J3KSC0 135 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 SEC14L5O43304 696 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 DIRAS1O95057 198 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 SFTPDP35247 375 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 TPD52P55327 224 aaPredicted RBP19.1■□□□□ 0.65
VPS29-206ENST00000549578 CLDN20P56880 219 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 RAC1P63000 192 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 FOXD4Q12950 439 aaPredicted RBP19.1■□□□□ 0.65
VPS29-206ENST00000549578 CCNIQ14094 377 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 C3orf33Q6P1S2 294 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 ULK3Q6PHR2 472 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 CANT1Q8WVQ1 401 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 MIB2Q96AX9 1013 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 SLC41A3Q96GZ6 507 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 PRRC1Q96M27 445 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 IL1RAPQ9NPH3 570 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 SERINC1Q9NRX5 453 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 SELENONQ9NZV5 590 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 RHCGQ9UBD6 479 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 SLC7A7Q9UM01 511 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 AURKCQ9UQB9 309 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 AP4B1Q9Y6B7 739 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 RP1L1Q8IWN7 2480 aaPredicted RBP19.1■□□□□ 0.65
VPS29-206ENST00000549578 TMEM72A0PK05 275 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 FFAR1O14842 300 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 LYPD3O95274 346 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 FABP3P05413 133 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 PTNP21246 168 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 FUT4P22083 530 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 CXCR1P25024 350 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 CLDN18P56856 261 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 SRYQ05066 204 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 CHRNB3Q05901 458 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 IGFBP7Q16270 282 aa19.1■□□□□ 0.65
VPS29-206ENST00000549578 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms