RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 AP4B1Q9Y6B7 739 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 A0A1B0GWA3 101 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 CPSF4LA6NMK7 179 aaKnown RBP15.46■□□□□ 0.07
LIG1-204ENST00000542460 EFNA2O43921 213 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 PEPDP12955 493 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 FKBP2P26885 142 aaKnown RBP15.46■□□□□ 0.07
LIG1-204ENST00000542460 PTGS2P35354 604 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 MAP2K6P52564 334 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 RAC1P63000 192 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 RBPJQ06330 500 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 CRYZQ08257 329 aaKnown RBP15.46■□□□□ 0.07
LIG1-204ENST00000542460 BCL2A1Q16548 175 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.46■□□□□ 0.071e-7■■□□□ 12.5
LIG1-204ENST00000542460 POMZP3Q6PJE2 187 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 ADGRG3Q86Y34 549 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 CHERPQ8IWX8 916 aaKnown RBP15.46■□□□□ 0.07
LIG1-204ENST00000542460 ADAMTS16Q8TE57 1224 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 C7orf34Q96L11 122 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 RAB3IPQ96QF0 476 aaPredicted RBP15.46■□□□□ 0.07
LIG1-204ENST00000542460 C12orf10Q9HB07 376 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 SELENONQ9NZV5 590 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 ACAD8Q9UKU7 415 aa15.46■□□□□ 0.07
LIG1-204ENST00000542460 A0A0B4J2E0 115 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 A0A1B0GX12 115 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 TRAPPC13A5PLN9 417 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 NPIPA2E9PIF3 369 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 NPIPA3F8WFD2 350 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 H3BML4 177 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 BCKDKO14874 412 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 SEMG1P04279 462 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 UMPSP11172 480 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 POU3F2P20265 443 aaPredicted RBP15.45■□□□□ 0.06
LIG1-204ENST00000542460 CXCR1P25024 350 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 IFNA8P32881 189 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 STARP49675 285 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 LHX2P50458 406 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 SELENBP1Q13228 472 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 ALG10BQ5I7T1 473 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 SWT1Q5T5J6 900 aaKnown RBP15.45■□□□□ 0.06
LIG1-204ENST00000542460 FGD2Q7Z6J4 655 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 SPATA24Q86W54 205 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 LILRA2Q8N149 483 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 MIB2Q96AX9 1013 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 SLC47A1Q96FL8 570 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 SEPHS2Q99611 448 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 MAGIXQ9H6Y5 334 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 TNFRSF10DQ9UBN6 386 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 CHRNA9Q9UGM1 479 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 SPIN1Q9Y657 262 aaPredicted RBP15.45■□□□□ 0.06
LIG1-204ENST00000542460 NCKAP5O14513 1909 aa15.45■□□□□ 0.06
LIG1-204ENST00000542460 TMED7-TICAM2A0A0A6YYA0 188 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 SEMA7AO75326 666 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 PNMTP11086 282 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 CPN1P15169 458 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 ABOP16442 354 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 ITGA2P17301 1181 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 HOXB6P17509 224 aaKnown RBP15.44■□□□□ 0.06
LIG1-204ENST00000542460 IL11P20809 199 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 TAS2R41P59536 307 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 VLDLRP98155 873 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 CHRNB3Q05901 458 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 PIN1Q13526 163 aaPredicted RBP15.44■□□□□ 0.06
LIG1-204ENST00000542460 FAM98BQ52LJ0 330 aaKnown RBP15.44■□□□□ 0.06
LIG1-204ENST00000542460 DCST1Q5T197 706 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 WLSQ5T9L3 541 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 C3orf33Q6P1S2 294 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 ATG4DQ86TL0 474 aaPredicted RBP15.44■□□□□ 0.06
LIG1-204ENST00000542460 CYP4Z1Q86W10 505 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 PM20D2Q8IYS1 436 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 SLC25A43Q8WUT9 341 aaPredicted RBP15.44■□□□□ 0.06
LIG1-204ENST00000542460 SLC38A4Q969I6 547 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 PRRC1Q96M27 445 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 IL1RAPQ9NPH3 570 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 TMED7Q9Y3B3 224 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 FAM32AQ9Y421 112 aaKnown RBP15.44■□□□□ 0.06
LIG1-204ENST00000542460 ENPP4Q9Y6X5 453 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 PCNX3Q9H6A9 2034 aa15.44■□□□□ 0.06
LIG1-204ENST00000542460 HEATR5AQ86XA9 2040 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 TCRBV3S1A0A5B6 114 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 DHRS12A0PJE2 317 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 ELOA3DA6NLF2 546 aaPredicted RBP15.43■□□□□ 0.06
LIG1-204ENST00000542460 GJE1A6NN92 205 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 J3QKU1 62 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 ZNHIT1O43257 154 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 OR5F1O95221 314 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 FABP3P05413 133 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 GPIP06744 558 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 THRBP10828 461 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 NQO1P15559 274 aaKnown RBP15.43■□□□□ 0.06
LIG1-204ENST00000542460 ZNF708P17019 499 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 YAP1P46937 504 aaKnown RBP15.43■□□□□ 0.06
LIG1-204ENST00000542460 CDH12P55289 794 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 CLDN18P56856 261 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 ELOA3BQ3SY89 546 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 TSEN54Q7Z6J9 526 aaKnown RBP15.43■□□□□ 0.06
LIG1-204ENST00000542460 TSPYL5Q86VY4 417 aaPredicted RBP15.43■□□□□ 0.06
LIG1-204ENST00000542460 ELOA3Q8NG57 546 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 FAM57AQ8TBR7 257 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 RNF217Q8TC41 542 aa15.43■□□□□ 0.06
LIG1-204ENST00000542460 SLC41A3Q96GZ6 507 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms