RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 DNAJA3Q96EY1 480 aa12.55□□□□□ -0.4
CPSF1-201ENST00000526271 HS6ST2Q96MM7 605 aa12.55□□□□□ -0.4
CPSF1-201ENST00000526271 OR7D2Q96RA2 312 aa12.55□□□□□ -0.4
CPSF1-201ENST00000526271 SDF2Q99470 211 aa12.55□□□□□ -0.4
CPSF1-201ENST00000526271 IGKV3D-15A0A087WSY6 115 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 BIRC5O15392 142 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 FCMRO60667 390 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 RAD51DO75771 328 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 FESP07332 822 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 ITGA5P08648 1049 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 HPGDP15428 266 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 ZNF16P17020 682 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-201ENST00000526271 IGFBP5P24593 272 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 ALDH3A1P30838 453 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 DIO1P49895 249 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 WDR4P57081 412 aaKnown RBP12.54□□□□□ -0.4
CPSF1-201ENST00000526271 SESN3P58005 492 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 FUT5Q11128 374 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 MST1LQ2TV78 715 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 GALNTL6Q49A17 601 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 TIGD2Q4W5G0 525 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 HSP90B2PQ58FF3 399 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 XKR7Q5GH72 579 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 PDZK1Q5T2W1 519 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 IL17RELQ6ZVW7 336 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 RIMKLAQ8IXN7 391 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 SLC43A2Q8N370 569 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 CCDC63Q8NA47 563 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 OR52N5Q8NH56 324 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 OR5W2Q8NH69 310 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 C10orf105Q8TEF2 133 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 ARL5BQ96KC2 179 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 DHRS9Q9BPW9 319 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 ACTRT3Q9BYD9 372 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 NGBQ9NPG2 151 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 CBLN4Q9NTU7 201 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 KLHL9Q9P2J3 617 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 DTNAQ9Y4J8 743 aa12.54□□□□□ -0.4
CPSF1-201ENST00000526271 PRAMEF27A3QJZ7 478 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 VWC2LB2RUY7 222 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 H3BQF6 201 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 PIP5K1BO14986 540 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 TRIM13O60858 407 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 NUDT14O95848 222 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 GGT1P19440 569 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 CD40P25942 277 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 CCT3P49368 545 aaKnown RBP12.53□□□□□ -0.4
CPSF1-201ENST00000526271 ZNF83P51522 516 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 NAA20P61599 178 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 TMPPEQ6ZT21 453 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 FAM71CQ8NEG0 241 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 OR5AK3PQ8NH89 298 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 TWIST2Q8WVJ9 160 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 COQ8BQ96D53 544 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 ZG16BQ96DA0 208 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 MTERF3Q96E29 417 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 REXO5Q96IC2 774 aaKnown RBP12.53□□□□□ -0.4
CPSF1-201ENST00000526271 OR5B2Q96R09 309 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 RHNO1Q9BSD3 238 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 SOX7Q9BT81 388 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 THUMPD3Q9BV44 507 aaKnown RBP12.53□□□□□ -0.4
CPSF1-201ENST00000526271 BARX1Q9HBU1 254 aaPredicted RBP12.53□□□□□ -0.4
CPSF1-201ENST00000526271 TIGARQ9NQ88 270 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 TMEM160Q9NX00 188 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 SNX8Q9Y5X2 465 aa12.53□□□□□ -0.4
CPSF1-201ENST00000526271 SERINC4A6NH21 518 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 ZNF264O43296 627 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 CRCPO75575 148 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 UGT2B17O75795 530 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 HSPA4LO95757 839 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 IFNA2P01563 188 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 FGF4P08620 206 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 NUDT6P53370 316 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 HBA1P69905 142 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 TP53BP2Q13625 1128 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 ZNF141Q15928 474 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 GABRA6Q16445 453 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 NRF1Q16656 503 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 AGAP6Q5VW22 663 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 FBXW9Q5XUX1 488 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 GALNT5Q7Z7M9 940 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 HMGN2P46Q86SG4 172 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 CCDC103Q8IW40 242 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 PIAS4Q8N2W9 510 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-201ENST00000526271 ANKRD42Q8N9B4 389 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 OR52E4Q8NGH9 312 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 OR5P2Q8WZ92 322 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 MUS81Q96NY9 551 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 C1orf50Q9BV19 199 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 MECRQ9BV79 373 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 CCDC106Q9BWC9 280 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 C1QTNF6Q9BXI9 259 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 AMBRA1Q9C0C7 1298 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 OR11A1Q9GZK7 315 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 LAT2Q9GZY6 243 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 ALG2Q9H553 416 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 NKIRAS1Q9NYS0 192 aa12.52□□□□□ -0.41
CPSF1-201ENST00000526271 GJE1A6NN92 205 aa12.51□□□□□ -0.41
CPSF1-201ENST00000526271 H7C417 338 aa12.51□□□□□ -0.41
CPSF1-201ENST00000526271 EIF4E2O60573 245 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms