RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 OR14I1A6ND48 311 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 B4DXG7 233 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 NPIPA2E9PIF3 369 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 NPIPA3F8WFD2 350 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 FMO6PO60774 539 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 EPPINO95925 133 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 IFNW1P05000 195 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 PEPDP12955 493 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 PRG2P13727 222 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 ABOP16442 354 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 PRKCAP17252 672 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 POU3F2P20265 443 aaPredicted RBP9.31□□□□□ -0.92
SKA1-204ENST00000488454 CXCR1P25024 350 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 FKBP2P26885 142 aaKnown RBP9.31□□□□□ -0.92
SKA1-204ENST00000488454 PTGS2P35354 604 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 OR1E2P47887 323 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 POLR2HP52434 150 aaKnown RBP9.31□□□□□ -0.92
SKA1-204ENST00000488454 FOXF1Q12946 379 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 FLOT2Q14254 428 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 OR1Q1Q15612 314 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 NRF1Q16656 503 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 SWI5Q1ZZU3 235 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 WLSQ5T9L3 541 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 C1orf146Q5VVC0 180 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 LCN8Q6JVE9 175 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 POMZP3Q6PJE2 187 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 DEF8Q6ZN54 512 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 PLEKHM3Q6ZWE6 761 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 CHMP1BQ7LBR1 199 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 GRINAQ7Z429 371 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 VTCN1Q7Z7D3 282 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 CYP4Z1Q86W10 505 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 ATCAYQ86WG3 371 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 GTPBP8Q8N3Z3 284 aaPredicted RBP9.31□□□□□ -0.92
SKA1-204ENST00000488454 LSMEM1Q8N8F7 131 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 ATP6V1C2Q8NEY4 427 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 OR6T1Q8NGN1 323 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 DNAJA4Q8WW22 397 aaPredicted RBP9.31□□□□□ -0.92
SKA1-204ENST00000488454 SLX1AQ9BQ83 275 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 SLC7A8Q9UHI5 535 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 POMPQ9Y244 141 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 ZNF337Q9Y3M9 751 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 LIPGQ9Y5X9 500 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 AP4B1Q9Y6B7 739 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 V9GYQ6 96 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 NINQ8N4C6 2090 aa9.31□□□□□ -0.92
SKA1-204ENST00000488454 AQP12BA6NM10 295 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 GJE1A6NN92 205 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 SHISA8B8ZZ34 492 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 H3BML4 177 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 ACOT8O14734 319 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 BCKDKO14874 412 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 ADAM11O75078 769 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 PNMTP11086 282 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 ITGA2P17301 1181 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 BMP7P18075 431 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 CCNA2P20248 432 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 TNFRSF1BP20333 461 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 TACR3P29371 465 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 TDGF1P3P51864 188 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 MAP2K6P52564 334 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 ZNF136P52737 540 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 CASP6P55212 293 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 GFRA1P56159 465 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 TAS2R41P59536 307 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 RAC1P63000 192 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 HSF1Q00613 529 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 PLAURQ03405 335 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 TLE1Q04724 770 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 CHRNB3Q05901 458 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 SF3B4Q15427 424 aaKnown RBP eCLIP9.3□□□□□ -0.921e-6■■■□□ 16.5
SKA1-204ENST00000488454 BCL2A1Q16548 175 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 TMEM44Q2T9K0 475 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 FAM98BQ52LJ0 330 aaKnown RBP9.3□□□□□ -0.92
SKA1-204ENST00000488454 SLC25A53Q5H9E4 307 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 NHSL2Q5HYW2 709 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 ENTPD8Q5MY95 495 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 PDSS1Q5T2R2 415 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 ZNF613Q6PF04 617 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 ULK3Q6PHR2 472 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 COMTD1Q86VU5 262 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 SPATA24Q86W54 205 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 RBM45Q8IUH3 476 aaKnown RBP9.3□□□□□ -0.92
SKA1-204ENST00000488454 LACC1Q8IV20 430 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 AQP12AQ8IXF9 295 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 PM20D2Q8IYS1 436 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 LILRA2Q8N149 483 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 ST6GALNAC3Q8NDV1 305 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 SMPDL3BQ92485 455 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 SLC47A1Q96FL8 570 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 TIMP4Q99727 224 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 KLHDC3Q9BQ90 382 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 RSPO3Q9BXY4 272 aaPredicted RBP9.3□□□□□ -0.92
SKA1-204ENST00000488454 POLR2J2Q9GZM3 115 aaKnown RBP9.3□□□□□ -0.92
SKA1-204ENST00000488454 POLR2J3Q9H1A7 115 aaKnown RBP9.3□□□□□ -0.92
SKA1-204ENST00000488454 ALKBH4Q9NXW9 302 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 RALYQ9UKM9 306 aaKnown RBP9.3□□□□□ -0.92
SKA1-204ENST00000488454 NBEAQ8NFP9 2946 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 BOD1L1Q8NFC6 3051 aa9.3□□□□□ -0.92
SKA1-204ENST00000488454 SPTA1P02549 2419 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms