RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 OR10A3P58181 314 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 OR12D2P58182 307 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 TMEM44Q2T9K0 475 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 PYDC2Q56P42 97 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ALG10BQ5I7T1 473 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ARMC4Q5T2S8 1044 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 IL20RBQ6UXL0 311 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 GRAMD2AQ8IUY3 354 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 BMPERQ8N8U9 685 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 GALNT6Q8NCL4 622 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 OR51L1Q8NGJ5 315 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 OR13C5Q8NGS8 318 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 OR5J2Q8NH18 312 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 C16orf52Q8NHV5 167 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ZPLD1Q8TCW7 415 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 CITED4Q96RK1 184 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 TEX12Q9BXU0 123 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 TMEM27Q9HBJ8 222 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 KRCC1Q9NPI7 259 aaPredicted RBP12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ASB6Q9NWX5 421 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 COQ3Q9NZJ6 369 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 THADAQ6YHU6 1953 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 PRR23D1E9PI22 279 aaPredicted RBP12.3□□□□□ -0.44
CCDC3-202ENST00000378839 AK1P00568 194 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 APOA1P02647 267 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 PRR23D2P0DMB1 279 aaPredicted RBP12.3□□□□□ -0.44
CCDC3-202ENST00000378839 SHC1P29353 583 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 KIR2DL3P43628 341 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 IGLV3-21P80748 117 aaPredicted RBP12.3□□□□□ -0.44
CCDC3-202ENST00000378839 IFITM2Q01629 132 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 CRYZQ08257 329 aaKnown RBP12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ASAH1Q13510 395 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 OAFQ86UD1 273 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 PARGQ86W56 976 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF687Q8N1G0 1237 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 GHDCQ8N2G8 530 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 CADM2Q8N3J6 435 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 OR5M3Q8NGP4 307 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 KLHDC7BQ96G42 594 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 POLE3Q9NRF9 147 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ERVK-19Q9WJR5 959 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ADAM18Q9Y3Q7 739 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 HEATR5AQ86XA9 2040 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 DMDP11532 3685 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 IGHV5-51A0A0C4DH38 117 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 DAPL1A0PJW8 107 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 OIP5O43482 229 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 RCBTB2O95199 551 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 TFP02787 698 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 IFI6P09912 130 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 SBK2P0C263 348 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 PGDP52209 483 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 EFNA3P52797 238 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 ARPC4P59998 168 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 DAB2P98082 770 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 FGFBP1Q14512 234 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 COL19A1Q14993 1142 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 FAAH2Q6GMR7 532 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 LSMEM1Q8N8F7 131 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 OR5W2Q8NH69 310 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 BEX2Q9BXY8 128 aa12.3□□□□□ -0.44
CCDC3-202ENST00000378839 SPRTNQ9H040 489 aaPredicted RBP12.3□□□□□ -0.44
CCDC3-202ENST00000378839 CFAP54Q96N23 3096 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 MCIDASD6RGH6 385 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 CTNSO60931 367 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 GAAP10253 952 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 TFPIP10646 304 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 HIST1H1CP16403 213 aaKnown RBP12.29□□□□□ -0.44
CCDC3-202ENST00000378839 THBS2P35442 1172 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 EVX1P49640 407 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 RPS7P62081 194 aaKnown RBP12.29□□□□□ -0.44
CCDC3-202ENST00000378839 STX4Q12846 297 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF141Q15928 474 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 NKAIN2Q5VXU1 208 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 ARMC6Q6NXE6 501 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 BCORP1Q8N888 145 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF615Q8N8J6 731 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 SMPDL3BQ92485 455 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 C4orf36Q96KX1 117 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 PGLYRP3Q96LB9 341 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 NECTIN4Q96NY8 510 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 CHRNA9Q9UGM1 479 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 SLC35A3Q9Y2D2 325 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 A0A1B0GVC2 190 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 A6NIN4 97 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 PAICSP22234 425 aaKnown RBP12.29□□□□□ -0.44
CCDC3-202ENST00000378839 KRR1Q13601 381 aaKnown RBP12.29□□□□□ -0.44
CCDC3-202ENST00000378839 KCNAB1Q14722 419 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 ARL9Q6T311 187 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 LYPD4Q6UWN0 246 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF517Q6ZMY9 492 aaPredicted RBP12.29□□□□□ -0.44
CCDC3-202ENST00000378839 SDR9C7Q8NEX9 313 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 OR4K13Q8NH42 304 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 RBM18Q96H35 190 aaKnown RBP12.29□□□□□ -0.44
CCDC3-202ENST00000378839 AHCYL2Q96HN2 611 aaKnown RBP12.29□□□□□ -0.44
CCDC3-202ENST00000378839 ST6GAL2Q96JF0 529 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF576Q9H609 170 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 ERVMER34-1Q9H9K5 563 aa12.29□□□□□ -0.44
CCDC3-202ENST00000378839 IGHV1OR15-9A0A0B4J2B8 117 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 A0A1W2PPC1 479 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms