RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 EIF2DP41214 584 aaKnown RBP10.69□□□□□ -0.7
PTPRF-203ENST00000372407 KNTC1P50748 2209 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 RAP2BP61225 183 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 ECH1Q13011 328 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 EXOSC7Q15024 291 aaKnown RBP10.69□□□□□ -0.7
PTPRF-203ENST00000372407 PTPRRQ15256 657 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 RTL10Q7L3V2 364 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 NLGN4XQ8N0W4 816 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 DNAJC5GQ8N7S2 189 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 OR7G1Q8NGA0 311 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 OR2T11Q8NH01 316 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 OR14L1PQ8NHC6 308 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 NPRL2Q8WTW4 380 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 SAV1Q9H4B6 383 aaPredicted RBP10.69□□□□□ -0.7
PTPRF-203ENST00000372407 NOX3Q9HBY0 568 aa10.69□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF443Q9Y2A4 671 aaPredicted RBP10.69□□□□□ -0.7
PTPRF-203ENST00000372407 COL11A2P13942 1736 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 TIAM2Q8IVF5 1701 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 BRINP1O60477 761 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 MAOAP21397 527 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 GABRA5P31644 462 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 UBE2NP61088 152 aaKnown RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 CTBSQ01459 385 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 C3orf38Q5JPI3 329 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 RPL22L1Q6P5R6 122 aaKnown RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 SLC35F3Q8IY50 421 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 MRPL43Q8N983 215 aaKnown RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 OR56B4Q8NH76 319 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 UBTD2Q8WUN7 234 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 FOXRED1Q96CU9 486 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 PLEKHJ1Q9NW61 149 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 PLEK2Q9NYT0 353 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 SRPK3Q9UPE1 567 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 RHBDD3Q9Y3P4 386 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 TRBV4-1A0A0J9YWV2 114 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 DVL2O14641 736 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 IFNA10P01566 189 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 GPX2P18283 190 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 FXYD4P59646 89 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 P2RY14Q15391 338 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 KCNJ8Q15842 424 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 PLK5Q496M5 336 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 LCN10Q6JVE6 187 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 SLC46A3Q7Z3Q1 461 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 BEST4Q8NFU0 473 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 OR2A12Q8NGT7 310 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 TM9SF4Q92544 642 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 OR5B2Q96R09 309 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 HINT2Q9BX68 163 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF436Q9C0F3 470 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 CD300AQ9UGN4 299 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 LSM5Q9Y4Y9 91 aaKnown RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 SLC9B1P1A6NJY1 282 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 CNOT4O95628 575 aaKnown RBP10.68□□□□□ -0.7
PTPRF-203ENST00000372407 PTHP01270 115 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 F3P13726 295 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 CEBPBP17676 345 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 BDKRB2P30411 391 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 MMP12P39900 470 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 WBP2NLQ6ICG8 309 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 ZNF585AQ6P3V2 769 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 TMEM185AQ8NFB2 350 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 FAM3CQ92520 227 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 CNTNAP3BQ96NU0 1288 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 MYADMQ96S97 322 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 RCE1Q9Y256 329 aa10.68□□□□□ -0.7
PTPRF-203ENST00000372407 EFCAB7A8K855 629 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SULT2B1O00204 365 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SERPINE2P07093 398 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 EVI2BP34910 448 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SLC1A3P43003 542 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 KIAA0895LQ68EN5 471 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 PELI3Q8N2H9 469 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 CLDN22Q8N7P3 220 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 FNDC9Q8TBE3 224 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 FGF13Q92913 245 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 ZBTB8AQ96BR9 441 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 EGLN3Q9H6Z9 239 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 KCNJ16Q9NPI9 418 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 COQ3Q9NZJ6 369 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SSC5DA1L4H1 1573 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 ANKRD31Q8N7Z5 1873 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 CACNG3O60359 315 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 GABARAPO95166 117 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 PVRP15151 417 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 TAS2R19P59542 299 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 GPR18Q14330 331 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 MRPL2Q5T653 305 aaKnown RBP10.67□□□□□ -0.7
PTPRF-203ENST00000372407 ANKRD33Q7Z3H0 272 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 OR56B2PQ8NGI1 322 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 OR5K2Q8NHB8 316 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SLC2A12Q8TD20 617 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SFXN2Q96NB2 322 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 SULT4A1Q9BR01 284 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 NICN1Q9BSH3 213 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 CHRDQ9H2X0 955 aa10.67□□□□□ -0.7
PTPRF-203ENST00000372407 RBFOX1Q9NWB1 397 aaKnown RBP10.67□□□□□ -0.7
PTPRF-203ENST00000372407 MYH4Q9Y623 1939 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms