RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CXorf21Q9HAI6 301 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 PCDHGA1Q9Y5H4 931 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 RLFQ13129 1914 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 EME2A4GXA9 379 aaPredicted RBP9.39□□□□□ -0.91
USP54-201ENST00000339859 QPRTQ15274 297 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 SLC16A14Q7RTX9 510 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 TMEM17Q86X19 198 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 SYT14Q8NB59 555 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 NAXEQ8NCW5 288 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 FBXO27Q8NI29 283 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 PCDHGA6Q9Y5G7 932 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 LOC110117498-PIK3R3F6TDL0 507 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 NADKO95544 446 aaPredicted RBP9.39□□□□□ -0.91
USP54-201ENST00000339859 LCKP06239 509 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 CYC1P08574 325 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 ZNF883P0CG24 379 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 ERVK-25P63136 954 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 SELENBP1Q13228 472 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 TMEM211Q6ICI0 200 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 YRDCQ86U90 279 aaKnown RBP9.39□□□□□ -0.91
USP54-201ENST00000339859 SLC43A2Q8N370 569 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 TMEM105Q8N8V8 129 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 APH1AQ96BI3 265 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 DDA1Q9BW61 102 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 TPK1Q9H3S4 243 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 AMBNQ9NP70 447 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 SEC14L4Q9UDX3 406 aa9.39□□□□□ -0.91
USP54-201ENST00000339859 SH3D21A4FU49 640 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 GRPRP30550 384 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 THBS2P35442 1172 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 GPR85P60893 370 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 SCRN3Q0VDG4 424 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 FAM199XQ6PEV8 388 aaPredicted RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 SGCDQ92629 289 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 SLC41A2Q96JW4 573 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 TTTY10Q9BZA0 68 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 FN3KQ9H479 309 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 TMEM138Q9NPI0 162 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 PLEK2Q9NYT0 353 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 COMMD9Q9P000 198 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 ZNF223Q9UK11 482 aaPredicted RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 PAIP2BQ9ULR5 123 aaKnown RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 PPT2Q9UMR5 302 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 SUMO3P55854 103 aaPredicted RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 DUSP5Q16690 384 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 ANKRD53Q8N9V6 530 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 SAP25Q8TEE9 199 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 FGF11Q92914 225 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 FEVQ99581 238 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 PAIP1Q9H074 479 aaKnown RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 RAB9BQ9NP90 201 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 FBXO8Q9NRD0 319 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 ARMC1Q9NVT9 282 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 KCNK2O95069 426 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 OR3A3P47888 321 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 OR3A2P47893 321 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 HOXC5Q00444 222 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 TSTQ16762 297 aaKnown RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 LSM14AQ8ND56 463 aaKnown RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 ST8SIA1Q92185 356 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 SPACA9Q96E40 222 aaPredicted RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 LRR1Q96L50 414 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 SECISBP2Q96T21 854 aaKnown RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 PDCD10Q9BUL8 212 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 VN1R1Q9GZP7 353 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 CBR3O75828 277 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 HRGP04196 525 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 THBS1P07996 1170 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 EIF2S3P41091 472 aaKnown RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 TSPAN5P62079 268 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 MAP4K2Q12851 820 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 ZNF628Q5EBL2 1059 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 TCTN3Q6NUS6 607 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 LANCL3Q6ZV70 420 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 DNAJC22Q8N4W6 341 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 OR7G2Q8NG99 324 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 C16orf52Q8NHV5 167 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 EID2BQ96D98 161 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 DIRAS2Q96HU8 199 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 INTS14Q96SY0 518 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 ANKRD19PQ9H560 264 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 TSC22D4Q9Y3Q8 395 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 MAGED1Q9Y5V3 778 aaPredicted RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 ICOSLGO75144 302 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 SERPINA7P05543 415 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 RELAQ04206 551 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 GAB1Q13480 694 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 FGFBP1Q14512 234 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 SMCO1Q147U7 214 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 PODNL1Q6PEZ8 512 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 BORAQ6PGQ7 559 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 DHRS4L2Q6PKH6 230 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 LINGO2Q7L985 606 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 SLC22A18ASQ8N1D0 253 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 LINC01555Q8NAE3 123 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 WDR12Q9GZL7 423 aaKnown RBP9.38□□□□□ -0.91
USP54-201ENST00000339859 ADAM18Q9Y3Q7 739 aa9.38□□□□□ -0.91
USP54-201ENST00000339859 HMX2A2RU54 273 aa9.37□□□□□ -0.91
USP54-201ENST00000339859 CCDC182A6NF36 153 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms