RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 LIPT1Q9Y234 373 aa11.3□□□□□ -0.6
CD44-203ENST00000278386 WDR45Q9Y484 360 aa11.3□□□□□ -0.6
CD44-203ENST00000278386 ZNF724A8MTY0 619 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 OVOL3O00110 214 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 ABCD4O14678 606 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 FCMRO60667 390 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 RAD51DO75771 328 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 AGR2O95994 175 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 TP53P04637 393 aaPredicted RBP11.29□□□□□ -0.6
CD44-203ENST00000278386 SERPINE1P05121 402 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 DANCRP0C864 163 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 COX5AP20674 150 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 IGHV1-2P23083 117 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 EDNRAP25101 427 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 RYKP34925 604 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 CHI3L1P36222 383 aaPredicted RBP11.29□□□□□ -0.6
CD44-203ENST00000278386 ACVR1BP36896 505 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 CHI3L2Q15782 390 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 ABLIM2Q6H8Q1 611 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 SEZ6L2Q6UXD5 910 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 TMPPEQ6ZT21 453 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 XAGE5Q8WWM1 108 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 RAB8BQ92930 207 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 ZIM3Q96PE6 472 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 TRIM2Q9C040 744 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 AKTIPQ9H8T0 292 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 CTPS2Q9NRF8 586 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 ACER3Q9NUN7 267 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 CHRNA9Q9UGM1 479 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 SLC35A3Q9Y2D2 325 aa11.29□□□□□ -0.6
CD44-203ENST00000278386 NOSIPQ9Y314 301 aaKnown RBP11.29□□□□□ -0.6
CD44-203ENST00000278386 HEATR1Q9H583 2144 aaKnown RBP11.29□□□□□ -0.6
CD44-203ENST00000278386 ANK3Q12955 4377 aaKnown RBP11.28□□□□□ -0.6
CD44-203ENST00000278386 DPRXA6NFQ7 191 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 ITM2AO43736 263 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 TYROBPO43914 113 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 RAMP1O60894 148 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 IGHV3-9P01782 118 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 MYZAPP0CAP1 466 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 UQCRC2P22695 453 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 ETV4P43268 484 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 MAPK14Q16539 360 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 SMU1Q2TAY7 513 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 PGGHGQ32M88 737 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 KRT71Q3SY84 523 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 GPAT3Q53EU6 434 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 TIMM23BQ5SRD1 257 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 ANXA8L1Q5VT79 327 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 TYW3Q6IPR3 259 aaKnown RBP11.28□□□□□ -0.6
CD44-203ENST00000278386 HMGN2P46Q86SG4 172 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 PIAS4Q8N2W9 510 aaPredicted RBP11.28□□□□□ -0.6
CD44-203ENST00000278386 VPS37AQ8NEZ2 397 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 OR8J2Q8NGG1 315 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 PIGXQ8TBF5 258 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 ROPN1LQ96C74 230 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 TRAF4Q9BUZ4 470 aaPredicted RBP11.28□□□□□ -0.6
CD44-203ENST00000278386 REG4Q9BYZ8 158 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 SLCO5A1Q9H2Y9 848 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 POLE3Q9NRF9 147 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 CISD1Q9NZ45 108 aaKnown RBP11.28□□□□□ -0.6
CD44-203ENST00000278386 NPAP1Q9NZP6 1156 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 MARCOQ9UEW3 520 aaPredicted RBP11.28□□□□□ -0.6
CD44-203ENST00000278386 POU2F3Q9UKI9 436 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 RTTNQ86VV8 2226 aa11.28□□□□□ -0.6
CD44-203ENST00000278386 ABCA1O95477 2261 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 CIB4A0PJX0 185 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 OR5H1A6NKK0 313 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 CCT8L1PA6NM43 557 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 SHISA9B4DS77 424 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 ANKRD28O15084 1053 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 DNAJA2O60884 412 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 BCAS1O75363 584 aaPredicted RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 IGHV4-39P01824 125 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 CCNA2P20248 432 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 PGM1P36871 562 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 APOBEC1P41238 236 aaKnown RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 CLNS1AP54105 237 aaKnown RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 ABCE1P61221 599 aaKnown RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 KRTAP1-1Q07627 177 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 FUT5Q11128 374 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 DPY19L1Q2PZI1 675 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 SAXO2Q658L1 398 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 HEPHL1Q6MZM0 1159 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 EMBQ6PCB8 327 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 FRRS1Q6ZNA5 592 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 SSX8Q7RTT4 187 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 GRINAQ7Z429 371 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 ARFGAP2Q8N6H7 521 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 ZNF433Q8N7K0 673 aaPredicted RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 FAM71CQ8NEG0 241 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 OR52N5Q8NH56 324 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 MIPOL1Q8TD10 442 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 AENQ8WTP8 325 aaKnown RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 ZNF75CPQ92670 426 aaPredicted RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 APH1AQ96BI3 265 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 MDFIQ99750 246 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 SLC35A5Q9BS91 424 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 OR11A1Q9GZK7 315 aa11.27□□□□□ -0.61
CD44-203ENST00000278386 BARX1Q9HBU1 254 aaPredicted RBP11.27□□□□□ -0.61
CD44-203ENST00000278386 GDF2Q9UK05 429 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms