RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GPX7Q96SL4 187 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 SDHCQ99643 169 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 MFRPQ9BY79 579 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 DPH1Q9BZG8 443 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 SRRQ9GZT4 340 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 PDE7BQ9NP56 450 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 MKKSQ9NPJ1 570 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 TRIM36Q9NQ86 728 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 PLEKHB1Q9UF11 243 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 MRTO4Q9UKD2 239 aaKnown RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 NTNG1Q9Y2I2 539 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 GPR52Q9Y2T5 361 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 PCDHGB7Q9Y5F8 929 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 CLDN16Q9Y5I7 305 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 ARPC4-TTLL3A0A0A6YYG9 625 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 SLC9B1P1A6NJY1 282 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 B4DGG1 531 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 LMO7DNF2Z398 122 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 CTDSP2O14595 271 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 TRAPPC2P0DI81 140 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 TRAPPC2BP0DI82 140 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 PRG2P13727 222 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 MLLT3P42568 568 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 DCAF7P61962 342 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 RPS25P62851 125 aaKnown RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 FOXD4Q12950 439 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 SLC13A2Q13183 592 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 IL10RAQ13651 578 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 CRTC2Q53ET0 693 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 CEP78Q5JTW2 689 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 FIGNL1Q6PIW4 674 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 PAMR1Q6UXH9 720 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 TPRA1Q86W33 373 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 KMT5CQ86Y97 462 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 SIMC1Q8NDZ2 872 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 OR4C6Q8NH72 309 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 GATAD2BQ8WXI9 593 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 KISS1RQ969F8 398 aaPredicted RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 C1GALT1C1Q96EU7 318 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 AHCYL2Q96HN2 611 aaKnown RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 SECISBP2Q96T21 854 aaKnown RBP9.1□□□□□ -0.95
SS18-205ENST00000542420 SLC38A3Q99624 504 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 KATNB1Q9BVA0 655 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.1□□□□□ -0.95
SS18-205ENST00000542420 SNTG1Q9NSN8 517 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 BABAM2Q9NXR7 383 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 RPS6KB2Q9UBS0 482 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 GMEB2Q9UKD1 530 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 SLC6A5Q9Y345 797 aa9.1□□□□□ -0.95
SS18-205ENST00000542420 FAM172BPA6NC97 362 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 CCDC182A6NF36 153 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 IMPA2O14732 288 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 PLD2O14939 933 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 ARPC3O15145 178 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SLC19A2O60779 497 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 RGS9O75916 674 aaPredicted RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 NDUFB2O95178 105 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 HLA-DQB1P01920 261 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 MT-ND5P03915 603 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 PNMTP11086 282 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 APEHP13798 732 aaKnown RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 HOXC5Q00444 222 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 HSF2Q03933 536 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 LGALS3BPQ08380 585 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 ASAH1Q13510 395 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 TMEM31Q5JXX7 168 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 PDZK1Q5T2W1 519 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 OR2G6Q5TZ20 316 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 C22orf42Q6IC83 251 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 Q6ZS52 159 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SYS1Q8N2H4 156 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 ZNF615Q8N8J6 731 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 ZNF527Q8NB42 609 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 PHYHIPQ92561 330 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 CNOT9Q92600 299 aaKnown RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 ART5Q96L15 291 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 DHRS9Q9BPW9 319 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 TMEM43Q9BTV4 400 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 NEK6Q9HC98 313 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 MEPEQ9NQ76 525 aaPredicted RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 FBXO34Q9NWN3 711 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 FLRT3Q9NZU0 649 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 NDRG2Q9UN36 371 aaKnown RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 A0A087WUJ7 227 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 A0A0A6YYC8 382 aaPredicted RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 C2orf92A0A1B0GVN3 265 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SERINC4A6NH21 518 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 I3L1I5 382 aaPredicted RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 POLR1CO15160 346 aaPredicted RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 PLPP2O43688 288 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 DYRK3O43781 588 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 GKN3PP0CG01 181 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 TYRP1P17643 537 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 ATP6V1E1P36543 226 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 RPS5P46782 204 aaKnown RBP9.09□□□□□ -0.95
SS18-205ENST00000542420 FNTBP49356 437 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 FABP5Q01469 135 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 SCN1BQ07699 218 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 C19orf57Q0VDD7 668 aa9.09□□□□□ -0.95
SS18-205ENST00000542420 HNRNPA0Q13151 305 aaKnown RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms