RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 CHAF1BQ13112 559 aa16.93■□□□□ 0.3
SMPD1-208ENST00000533123 TRAM2Q15035 370 aa16.93■□□□□ 0.3
SMPD1-208ENST00000533123 CLEC1AQ8NC01 280 aa16.93■□□□□ 0.3
SMPD1-208ENST00000533123 SLC22A8Q8TCC7 542 aa16.93■□□□□ 0.3
SMPD1-208ENST00000533123 THAP4Q8WY91 577 aa16.93■□□□□ 0.3
SMPD1-208ENST00000533123 PSMF1Q92530 271 aa16.93■□□□□ 0.3
SMPD1-208ENST00000533123 CNOT9Q92600 299 aaKnown RBP16.93■□□□□ 0.3
SMPD1-208ENST00000533123 SLC41A3Q96GZ6 507 aa16.93■□□□□ 0.3
SMPD1-208ENST00000533123 PCDHGA10Q9Y5H3 936 aa16.93■□□□□ 0.3
SMPD1-208ENST00000533123 NPIPB9F8W1W9 429 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 PFDN1O60925 122 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 ICOSLGO75144 302 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 PPM1BO75688 479 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 UTS2O95399 124 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 OSMP13725 252 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 ITGA3P26006 1051 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 PNLIPRP2P54317 469 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 ST3GAL3Q11203 375 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 AIMP2Q13155 320 aaKnown RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 DCTN2Q13561 401 aaKnown RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 KCTD8Q6ZWB6 473 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 RANBP3LQ86VV4 465 aaPredicted RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 SNIP1Q8TAD8 396 aaKnown RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 PMM1Q92871 262 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 SLC38A4Q969I6 547 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 CCNL2Q96S94 520 aaPredicted RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 DGCR6LQ9BY27 220 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 POLR2J3Q9H1A7 115 aaKnown RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 RSL24D1Q9UHA3 163 aaKnown RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 SLC7A7Q9UM01 511 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 OR6C70A6NIJ9 312 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 MLF1P58340 268 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 PSPHP78330 225 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 NEDD8Q15843 81 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 H3F3CQ6NXT2 135 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 LYPD8Q6UX82 237 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 ZNF730Q6ZMV8 503 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 CCDC103Q8IW40 242 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 TMEM255BQ8WV15 326 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 ZNF566Q969W8 418 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 CCDC86Q9H6F5 360 aaKnown RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 UBQLN4Q9NRR5 601 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 CHCHD3Q9NX63 227 aaKnown RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 ZNF226Q9NYT6 803 aa16.92■□□□□ 0.3
SMPD1-208ENST00000533123 YARS2Q9Y2Z4 477 aaKnown RBP16.92■□□□□ 0.3
SMPD1-208ENST00000533123 ZAR1LA6NP61 321 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 ZNF891A8MT65 544 aaPredicted RBP16.91■□□□□ 0.3
SMPD1-208ENST00000533123 ADAM11O75078 769 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 OR5F1O95221 314 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 TP53P04637 393 aaPredicted RBP16.91■□□□□ 0.3
SMPD1-208ENST00000533123 SOX3P41225 446 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 ESRRGP62508 458 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 TOP3AQ13472 1001 aaPredicted RBP16.91■□□□□ 0.3
SMPD1-208ENST00000533123 ZNF141Q15928 474 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 C1orf94Q6P1W5 598 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 APOOLQ6UXV4 268 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 PRICKLE2Q7Z3G6 844 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 NR4A3Q92570 626 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 DPH1Q9BZG8 443 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 CNIH4Q9P003 139 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 BLOC1S6Q9UL45 172 aa16.91■□□□□ 0.3
SMPD1-208ENST00000533123 CHD8Q9HCK8 2581 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 H3BN98 237 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 PIP5K1CO60331 668 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 CCDC159P0C7I6 412 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 HPGDP15428 266 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 GABARAPL2P60520 117 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 BROXQ5VW32 411 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 ARMC10Q8N2F6 343 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 RHBDL2Q9NX52 303 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 ENOPH1Q9UHY7 261 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 MGAQ8IWI9 3026 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 IFNA8P32881 189 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 CDC20Q12834 499 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 PMS2P3Q13401 168 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 OR1Q1Q15612 314 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 NDUFAF6Q330K2 333 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 KLHL26Q53HC5 615 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 ACER2Q5QJU3 275 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 IL20RBQ6UXL0 311 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 WDR88Q6ZMY6 472 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 ERI1Q8IV48 349 aaKnown RBP16.9■□□□□ 0.3
SMPD1-208ENST00000533123 SLC15A4Q8N697 577 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 GATSQ8NAP1 163 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 FAM46AQ96IP4 442 aaKnown RBP16.9■□□□□ 0.3
SMPD1-208ENST00000533123 HOXD1Q9GZZ0 328 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 LHPPQ9H008 270 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 DNAJB12Q9NXW2 375 aaKnown RBP16.9■□□□□ 0.3
SMPD1-208ENST00000533123 EXPH5Q8NEV8 1989 aa16.9■□□□□ 0.3
SMPD1-208ENST00000533123 A6NL46 340 aa16.89■□□□□ 0.29
SMPD1-208ENST00000533123 SCDO00767 359 aa16.89■□□□□ 0.29
SMPD1-208ENST00000533123 FBXO45P0C2W1 286 aa16.89■□□□□ 0.29
SMPD1-208ENST00000533123 NAGAP17050 411 aa16.89■□□□□ 0.29
SMPD1-208ENST00000533123 GABRB1P18505 474 aa16.89■□□□□ 0.29
SMPD1-208ENST00000533123 TBXA2RP21731 343 aa16.89■□□□□ 0.29
SMPD1-208ENST00000533123 TMED10P49755 219 aaKnown RBP16.89■□□□□ 0.29
SMPD1-208ENST00000533123 SSR4P51571 173 aa16.89■□□□□ 0.29
SMPD1-208ENST00000533123 JMJD6Q6NYC1 403 aaPredicted RBP16.89■□□□□ 0.29
SMPD1-208ENST00000533123 SPARTQ8N0X7 666 aa16.89■□□□□ 0.29
SMPD1-208ENST00000533123 LINC00471Q8N535 108 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms