RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 SNX33Q8WV41 574 aa8.97□□□□□ -0.97
VCAN-210ENST00000513960 PRRC1Q96M27 445 aa8.97□□□□□ -0.97
VCAN-210ENST00000513960 SEMA4CQ9C0C4 833 aa8.97□□□□□ -0.97
VCAN-210ENST00000513960 KCND3Q9UK17 655 aa8.97□□□□□ -0.97
VCAN-210ENST00000513960 MRTO4Q9UKD2 239 aaKnown RBP8.97□□□□□ -0.97
VCAN-210ENST00000513960 EDARQ9UNE0 448 aa8.97□□□□□ -0.97
VCAN-210ENST00000513960 ICKQ9UPZ9 632 aa8.97□□□□□ -0.97
VCAN-210ENST00000513960 ENTPD4Q9Y227 616 aa8.97□□□□□ -0.97
VCAN-210ENST00000513960 LAMA2P24043 3122 aaKnown RBP8.96□□□□□ -0.97
VCAN-210ENST00000513960 ARID1AO14497 2285 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 SLC22A23A1A5C7 686 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 C7orf66A4D0T2 115 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 ARRDC5A6NEK1 342 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 DISC1C4P0D8 188 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 KHNYNO15037 678 aaKnown RBP8.96□□□□□ -0.97
VCAN-210ENST00000513960 KLHL18O94889 574 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 RECKO95980 971 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 GRPRP30550 384 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 HCCSP53701 268 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 ARHGAP19Q14CB8 494 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 PGGHGQ32M88 737 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 FAM46CQ5VWP2 391 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 OR8S1Q8NH09 359 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 ABHD4Q8TB40 342 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 C2CD4CQ8TF44 421 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 ZDHHC1Q8WTX9 485 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 RSPRY1Q96DX4 576 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 TSNAXQ99598 290 aaKnown RBP8.96□□□□□ -0.97
VCAN-210ENST00000513960 PDCD10Q9BUL8 212 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 PELI2Q9HAT8 420 aa8.96□□□□□ -0.97
VCAN-210ENST00000513960 PCDHGA9Q9Y5G4 932 aaKnown RBP8.96□□□□□ -0.97
VCAN-210ENST00000513960 FAM86C2PA6NEL3 165 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 SCAMP1O15126 338 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 SEC14L5O43304 696 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 PSMB1P20618 241 aaKnown RBP8.96□□□□□ -0.98
VCAN-210ENST00000513960 TBXA2RP21731 343 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 PSMB10P40306 273 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 P2RY2P41231 377 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 KHKP50053 298 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 ANXA11P50995 505 aaKnown RBP8.96□□□□□ -0.98
VCAN-210ENST00000513960 GMFBP60983 142 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 TGM3Q08188 693 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 GK2Q14410 553 aaPredicted RBP8.96□□□□□ -0.98
VCAN-210ENST00000513960 SLC22A10Q63ZE4 541 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 ATRAIDQ6UW56 229 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 TMED4Q7Z7H5 227 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 COMTD1Q86VU5 262 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 FAM98AQ8NCA5 519 aaKnown RBP8.96□□□□□ -0.98
VCAN-210ENST00000513960 MARVELD3Q96A59 401 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 RAB7BQ96AH8 199 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 RGMAQ96B86 450 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 TM4SF18Q96CE8 201 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 NEURL3Q96EH8 262 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 MS4A8Q9BY19 250 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 ACTR6Q9GZN1 396 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 SEMA4GQ9NTN9 838 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 SLC23A2Q9UGH3 650 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 GMEB2Q9UKD1 530 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 GTF2A1LQ9UNN4 478 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 A0A0G2JPF8 293 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 HNRNPCL3B7ZW38 293 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 HMGN2P05204 90 aaKnown RBP8.96□□□□□ -0.98
VCAN-210ENST00000513960 HNRNPCL4P0DMR1 293 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 ZNF35P13682 527 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 NDUFV2P19404 249 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 EDNRAP25101 427 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 SOX2P48431 317 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 METTL11BQ5VVY1 283 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 ZFP82Q8N141 532 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 TBC1D19Q8N5T2 526 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 OR5K2Q8NHB8 316 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 TMEM255BQ8WV15 326 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 GHSRQ92847 366 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 YIPF5Q969M3 257 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 ZNF707Q96C28 371 aaPredicted RBP8.96□□□□□ -0.98
VCAN-210ENST00000513960 WDR89Q96FK6 387 aaPredicted RBP8.96□□□□□ -0.98
VCAN-210ENST00000513960 DPYSL5Q9BPU6 564 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 TMEM185BQ9H7F4 350 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 CA10Q9NS85 328 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 ACTR10Q9NZ32 417 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 GNG8Q9UK08 70 aa8.96□□□□□ -0.98
VCAN-210ENST00000513960 A0A1W2PRQ8 180 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 IGLON5A6NGN9 336 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 E9PQ18 207 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 PPM1DO15297 605 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 SDC3O75056 442 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 RPP14O95059 124 aaKnown RBP8.95□□□□□ -0.98
VCAN-210ENST00000513960 UBL3O95164 117 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 HMGN1P05114 100 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 CXCL2P19875 107 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 PTBP1P26599 531 aaKnown RBP eCLIP8.95□□□□□ -0.98
VCAN-210ENST00000513960 PSMB5P28074 263 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 CDK5Q00535 292 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 IGSF11Q5DX21 431 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 HEPHL1Q6MZM0 1159 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 GSG1LQ6UXU4 331 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 SLC44A3Q8N4M1 653 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 OR52I2Q8NH67 350 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 FANK1Q8TC84 345 aa8.95□□□□□ -0.98
VCAN-210ENST00000513960 ZNF578Q96N58 590 aaPredicted RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms