RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TMEM79Q9BSE2 394 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 FAIM2Q9BWQ8 316 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 PRDM13Q9H4Q3 707 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 PARPBPQ9NWS1 579 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 GPR160Q9UJ42 338 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 GPC6Q9Y625 555 aaPredicted RBP6.88□□□□□ -1.31
USP54-211ENST00000474929 DNAH1Q9P2D7 4330 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 RBMY1BA6NDE4 496 aaKnown RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 RBMY1EA6NEQ0 496 aaKnown RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 MIF4GDA9UHW6 222 aaKnown RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 PDLIM1O00151 329 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 GPR37O15354 613 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 GMFGO60234 142 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 KCNH1O95259 989 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 IGHV3-9P01782 118 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 HPXP02790 462 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 S100BP04271 92 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 RBMY1DP0C7P1 496 aaKnown RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 MLNP12872 115 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 MPGP29372 298 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 TIA1P31483 386 aaKnown RBP eCLIP6.87□□□□□ -1.31
USP54-211ENST00000474929 THBS4P35443 961 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 PIK3CGP48736 1102 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 SUMO3P55854 103 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 MRPS35P82673 323 aaKnown RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 ILF2Q12905 390 aaKnown RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 FOXF1Q12946 379 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 ZNF154Q13106 437 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 TMEM176BQ3YBM2 270 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 HSP90AA5PQ58FG0 334 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 OXLD1Q5BKU9 147 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 DEFB121Q5J5C9 76 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 KLF17Q5JT82 389 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 FAM209AQ5JX71 171 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 RBM20Q5T481 1227 aaKnown RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 CARM1Q86X55 608 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 RELL1Q8IUW5 271 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 BCL6BQ8N143 479 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 IL17RDQ8NFM7 739 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 CEP70Q8NHQ1 597 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 PIGXQ8TBF5 258 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 SSMEM1Q8WWF3 244 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 ZNF75CPQ92670 426 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 FAM71F1Q96KD3 344 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 TBX15Q96SF7 602 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 GAL3ST1Q99999 423 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 DENND2DQ9H6A0 471 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 NHEJ1Q9H9Q4 299 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 XAB2Q9HCS7 855 aaKnown RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 PALMDQ9NP74 551 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 PFDN4Q9NQP4 134 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 AHSPQ9NZD4 102 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 CRNNQ9UBG3 495 aaPredicted RBP6.87□□□□□ -1.31
USP54-211ENST00000474929 IL20RAQ9UHF4 553 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 VWA7Q9Y334 891 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 PCDHA9Q9Y5H5 950 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 ACTL7BQ9Y614 415 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 STAB2Q8WWQ8 2551 aa6.87□□□□□ -1.31
USP54-211ENST00000474929 DNAH3Q8TD57 4116 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 ARPC4-TTLL3A0A0A6YYG9 625 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 IGHV3-15A0A0B4J1V0 119 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 TMEM129A0AVI4 362 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 NCF1BA6NI72 391 aaPredicted RBP6.86□□□□□ -1.31
USP54-211ENST00000474929 NCF1CA8MVU1 366 aaPredicted RBP6.86□□□□□ -1.31
USP54-211ENST00000474929 POC1B-GALNT4F8VUJ3 575 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 K7EIL1 84 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 DNPH1O43598 174 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 PLOD3O60568 738 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 CCNT2O60583 730 aaKnown RBP6.86□□□□□ -1.31
USP54-211ENST00000474929 PRAMEF4O60810 478 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 UTS2O95399 124 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 IGHMP01871 453 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 CECR9P0C854 216 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 NCF1P14598 390 aaPredicted RBP6.86□□□□□ -1.31
USP54-211ENST00000474929 HPGDP15428 266 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 ZNF12P17014 697 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 COL8A2P25067 703 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 EDNRAP25101 427 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 LCN1P31025 176 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 HSPA7P48741 367 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 RNF144AP50876 292 aaPredicted RBP6.86□□□□□ -1.31
USP54-211ENST00000474929 MAPK12P53778 367 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 LCN2P80188 198 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 PSG6Q00889 435 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 SLC18A2Q05940 514 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 SLC3A1Q07837 685 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 HERPUD1Q15011 391 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 TSNQ15631 228 aaKnown RBP6.86□□□□□ -1.31
USP54-211ENST00000474929 HFEQ30201 348 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 PCGF3Q3KNV8 242 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 PRAMEF9Q5VWM5 478 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 FOXB2Q5VYV0 432 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 C11orf88Q6PI97 169 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 CASP12Q6UXS9 341 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 GALNT4Q8N4A0 578 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 OR52E2Q8NGJ4 325 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 TBC1D15Q8TC07 691 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 TRPC4APQ8TEL6 797 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 LRTOMTQ8WZ04 291 aa6.86□□□□□ -1.31
USP54-211ENST00000474929 ALG3Q92685 438 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms