RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 PLPPR5Q32ZL2 321 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 TRILQ7L0X0 811 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 FGD2Q7Z6J4 655 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 VTCN1Q7Z7D3 282 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 GRAMD2AQ8IUY3 354 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 CHERPQ8IWX8 916 aaKnown RBP11.81□□□□□ -0.52
VPS33A-202ENST00000451053 FAM86B1Q8N7N1 296 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 TOR1AIP2Q8NFQ8 470 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 OR5M1Q8NGP8 315 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 SLC35B4Q969S0 331 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 MIB2Q96AX9 1013 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 SLCO4A1Q96BD0 722 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 WFDC6Q9BQY6 131 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 CHID1Q9BWS9 393 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 LDAHQ9H6V9 325 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 IL1RAPQ9NPH3 570 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 MED17Q9NVC6 651 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 C6orf203Q9P0P8 240 aaPredicted RBP11.81□□□□□ -0.52
VPS33A-202ENST00000451053 SPRR3Q9UBC9 169 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 SLC6A5Q9Y345 797 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 MRPS18CQ9Y3D5 142 aaKnown RBP11.81□□□□□ -0.52
VPS33A-202ENST00000451053 COL6A6A6NMZ7 2263 aa11.81□□□□□ -0.52
VPS33A-202ENST00000451053 SHANK1Q9Y566 2161 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 TRGV5A0A0B4J1U4 118 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 A0A1B0GTH9 108 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 H3BNX3 289 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 HCN1O60741 890 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 DEAF1O75398 565 aaPredicted RBP11.8□□□□□ -0.52
VPS33A-202ENST00000451053 BAG2O95816 211 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 LGI1O95970 557 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 SEMG1P04279 462 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 EDN3P14138 238 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 ANPEPP15144 967 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 PGCP20142 388 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 FASP25445 335 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 ACAA2P42765 397 aaKnown RBP11.8□□□□□ -0.52
VPS33A-202ENST00000451053 MAGEA2P43356 314 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 B3GALT5-AS1P59052 145 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 HOXC5Q00444 222 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 EPS8Q12929 822 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 FOXF1Q12946 379 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 QPRTQ15274 297 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 IGFBP7Q16270 282 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 TMEM44Q2T9K0 475 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 KRTCAP3Q53RY4 240 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 RAET1LQ5VY80 246 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 GFRALQ6UXV0 394 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 PIWIL3Q7Z3Z3 882 aaKnown RBP11.8□□□□□ -0.52
VPS33A-202ENST00000451053 CYP4Z1Q86W10 505 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 LSRQ86X29 649 aaPredicted RBP11.8□□□□□ -0.52
VPS33A-202ENST00000451053 ZDHHC21Q8IVQ6 265 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 ZNF440Q8IYI8 595 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 GHDCQ8N2G8 530 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 PQLC1Q8N2U9 271 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 OR10Q1Q8NGQ4 319 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 NEIL3Q8TAT5 605 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 POC1BQ8TC44 478 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 DTNBP1Q96EV8 351 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 ZNF347Q96SE7 839 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 EXO5Q9H790 373 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 TNFRSF10DQ9UBN6 386 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 SH3GLB1Q9Y371 365 aa11.8□□□□□ -0.52
VPS33A-202ENST00000451053 A0A087WZY1 265 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 A0A1B0GVC2 190 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 FAM47E-STBD1D6RA91 191 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 M0R3H8 397 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 SUSD5O60279 629 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 TIPRLO75663 272 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 LDLRP01130 860 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 PRKCAP17252 672 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 TNFRSF1BP20333 461 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 IFNA8P32881 189 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 SLC6A8P48029 635 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 ZNF136P52737 540 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 GFRA1P56159 465 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 SLC34A1Q06495 639 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 C19orf57Q0VDD7 668 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 SNCBQ16143 134 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 NRF1Q16656 503 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 GLYR1Q49A26 553 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-202ENST00000451053 DCST1Q5T197 706 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 ZNF550Q7Z398 422 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 CARM1Q86X55 608 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 LACC1Q8IV20 430 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 ST6GALNAC3Q8NDV1 305 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 ZBTB8AQ96BR9 441 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 SFXN2Q96NB2 322 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 ARHGDIGQ99819 225 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 BDH2Q9BUT1 245 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 STOML1Q9UBI4 398 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 DNAJB9Q9UBS3 223 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 FAM32AQ9Y421 112 aaKnown RBP11.79□□□□□ -0.52
VPS33A-202ENST00000451053 SPTA1P02549 2419 aa11.79□□□□□ -0.52
VPS33A-202ENST00000451053 FAM208BQ5VWN6 2430 aa11.78□□□□□ -0.52
VPS33A-202ENST00000451053 HEATR5AQ86XA9 2040 aa11.78□□□□□ -0.52
VPS33A-202ENST00000451053 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.78□□□□□ -0.52
VPS33A-202ENST00000451053 OR2M5A3KFT3 312 aa11.78□□□□□ -0.52
VPS33A-202ENST00000451053 C7orf72A4D263 438 aa11.78□□□□□ -0.52
VPS33A-202ENST00000451053 ETV2O00321 342 aaPredicted RBP11.78□□□□□ -0.52
VPS33A-202ENST00000451053 FAAHO00519 579 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms