RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 INTS12Q96CB8 462 aaKnown RBP14.75□□□□□ -0.05
SF3A1-204ENST00000447376 RCN3Q96D15 328 aa14.75□□□□□ -0.05
SF3A1-204ENST00000447376 SPOCK3Q9BQ16 436 aa14.75□□□□□ -0.05
SF3A1-204ENST00000447376 TREX2Q9BQ50 279 aaPredicted RBP14.75□□□□□ -0.05
SF3A1-204ENST00000447376 SPATA9Q9BWV2 254 aa14.75□□□□□ -0.05
SF3A1-204ENST00000447376 SLC38A1Q9H2H9 487 aa14.75□□□□□ -0.05
SF3A1-204ENST00000447376 TMEM38AQ9H6F2 299 aa14.75□□□□□ -0.05
SF3A1-204ENST00000447376 TMEM185BQ9H7F4 350 aa14.75□□□□□ -0.05
SF3A1-204ENST00000447376 EXOSC3Q9NQT5 275 aaKnown RBP14.75□□□□□ -0.05
SF3A1-204ENST00000447376 FOXD3Q9UJU5 478 aaPredicted RBP14.75□□□□□ -0.05
SF3A1-204ENST00000447376 AP3M1Q9Y2T2 418 aa14.75□□□□□ -0.05
SF3A1-204ENST00000447376 NDUFAB1O14561 156 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 AIM2O14862 343 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 PLGP00747 810 aaPredicted RBP14.74□□□□□ -0.05
SF3A1-204ENST00000447376 PABPC4LP0CB38 370 aaKnown RBP14.74□□□□□ -0.05
SF3A1-204ENST00000447376 ARAFP10398 606 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 PRKCAP17252 672 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 CPA2P48052 419 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 MTPNP58546 118 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 CDK6Q00534 326 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 RBBP4Q09028 425 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 PON3Q15166 354 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 MAPK14Q16539 360 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 GTF2IRD2BQ6EKJ0 949 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 NANOGP8Q6NSW7 305 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 REEP3Q6NUK4 255 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 C3orf33Q6P1S2 294 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 ARPINQ7Z6K5 226 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 GTF2IRD2Q86UP8 949 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 KRT73Q86Y46 540 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 TREML1Q86YW5 311 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 SLC30A8Q8IWU4 369 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 MCEMP1Q8IX19 187 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 GCNT2Q8N0V5 402 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 C11orf65Q8NCR3 313 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 NAXEQ8NCW5 288 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 OR10D3Q8NH80 312 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 OR2V1Q8NHB1 315 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 TMEM19Q96HH6 336 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 KLHL15Q96M94 604 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 HOPXQ9BPY8 73 aaPredicted RBP14.74□□□□□ -0.05
SF3A1-204ENST00000447376 ECSITQ9BQ95 431 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 QRSL1Q9H0R6 528 aaKnown RBP14.74□□□□□ -0.05
SF3A1-204ENST00000447376 PIGMQ9H3S5 423 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 IKZF5Q9H5V7 419 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 NANOGQ9H9S0 305 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 BCL2L10Q9HD36 194 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 KCNE5Q9UJ90 142 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 IFT52Q9Y366 437 aa14.74□□□□□ -0.05
SF3A1-204ENST00000447376 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 KDM4EB2RXH2 506 aaPredicted RBP14.73□□□□□ -0.05
SF3A1-204ENST00000447376 OIP5O43482 229 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 NUDT7P0C024 238 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 NID1P14543 1247 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 UQCRC1P31930 480 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 RYKP34925 604 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 SFTPDP35247 375 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 PGM1P36871 562 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 HTR3AP46098 478 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 ZNF136P52737 540 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 SUCLG1P53597 346 aaKnown RBP14.73□□□□□ -0.05
SF3A1-204ENST00000447376 CARD18P57730 90 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 MERTKQ12866 999 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 SCARB2Q14108 478 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 GDF7Q7Z4P5 450 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 SERPINA11Q86U17 422 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 KIF18BQ86Y91 864 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 CNEP1R1Q8N9A8 125 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 ATP6V1C2Q8NEY4 427 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 OR52P1PQ8NH57 321 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 BCAS4Q8TDM0 211 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 MAL2Q969L2 176 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 SLC39A3Q9BRY0 314 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 SPATA5L1Q9BVQ7 753 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 KAT8Q9H7Z6 458 aaKnown RBP14.73□□□□□ -0.05
SF3A1-204ENST00000447376 ANGPT4Q9Y264 503 aa14.73□□□□□ -0.05
SF3A1-204ENST00000447376 CENPVL1A0A0U1RR11 272 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 H0YC42 278 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 C19orf84I3L1E1 186 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 TNFSF11O14788 317 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 ADAMDEC1O15204 470 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 SERPINB7O75635 380 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 PGM3O95394 542 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 THBS1P07996 1170 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 ETS2P15036 469 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 PSMA4P25789 261 aaKnown RBP14.72□□□□□ -0.05
SF3A1-204ENST00000447376 FKBP2P26885 142 aaKnown RBP14.72□□□□□ -0.05
SF3A1-204ENST00000447376 APOBEC1P41238 236 aaKnown RBP14.72□□□□□ -0.05
SF3A1-204ENST00000447376 NUDT2P50583 147 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 MNAT1P51948 309 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 AGFG1P52594 562 aaKnown RBP14.72□□□□□ -0.05
SF3A1-204ENST00000447376 TPD52P55327 224 aaPredicted RBP14.72□□□□□ -0.05
SF3A1-204ENST00000447376 COPZ1P61923 177 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 TOMM34Q15785 309 aaPredicted RBP14.72□□□□□ -0.05
SF3A1-204ENST00000447376 SLC25A53Q5H9E4 307 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 POMZP3Q6PJE2 187 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 HACD2Q6Y1H2 254 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 HMGN2P46Q86SG4 172 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 GGNQ86UU5 652 aa14.72□□□□□ -0.05
SF3A1-204ENST00000447376 LIX1LQ8IVB5 337 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms