RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 TREX1Q9NSU2 369 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 B3GNT3Q9Y2A9 372 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 WIF1Q9Y5W5 379 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 M0R233 179 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 SERPINA12Q8IW75 414 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 OR1S1Q8NH92 325 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 C4orf36Q96KX1 117 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 VRK1Q99986 396 aaPredicted RBP10.61□□□□□ -0.71
TTC28-201ENST00000397906 PDE4DIPQ5VU43 2346 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 BLACEA4D250 179 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 LIPCP11150 499 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 ADPRHP54922 357 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 LILRA3Q8N6C8 439 aaPredicted RBP10.61□□□□□ -0.71
TTC28-201ENST00000397906 ZNF566Q969W8 418 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 ATP13A2Q9NQ11 1180 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 N4BP2Q86UW6 1770 aaPredicted RBP10.61□□□□□ -0.71
TTC28-201ENST00000397906 SRPX2O60687 465 aaPredicted RBP10.61□□□□□ -0.71
TTC28-201ENST00000397906 ARSBP15848 533 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 P2RY14Q15391 338 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 HBMQ6B0K9 141 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 TMEM165Q9HC07 324 aa10.61□□□□□ -0.71
TTC28-201ENST00000397906 ITGB4P16144 1822 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 ZNF264O43296 627 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 MSL3P1P0C860 447 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 DPP4P27487 766 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 SPOCK1Q08629 439 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 RHEBQ15382 184 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 BEST3Q8N1M1 668 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 ITGB1BP2Q9UKP3 347 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 INMT-MINDY4F8WBC2 141 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 KLRC4-KLRK1H3BQV0 150 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 CAPNS1P04632 268 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 TACR3P29371 465 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 HBA1P69905 142 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 C18orf63Q68DL7 685 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 DTWD1Q8N5C7 304 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 TSPAN10Q9H1Z9 355 aaPredicted RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 OLAHQ9NV23 265 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 B8ZZF3 427 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 ATXN1LP0C7T5 689 aaKnown RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 CRHBPP24387 322 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 MAGEA6P43360 314 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 EXOSC6Q5RKV6 272 aaKnown RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 MARCH3Q86UD3 253 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 OR4K15Q8NH41 348 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 EGLN2Q96KS0 407 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 ZNF597Q96LX8 424 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 ASB16Q96NS5 453 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 LMF2Q9BU23 707 aaKnown RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 HHLA1C9JL84 531 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 TRAPPC2LH3BP13 241 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 ITGBL1O95965 494 aaPredicted RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 CHMP24386 653 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 CD34P28906 385 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 PXKQ7Z7A4 578 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 C1QTNF6Q9BXI9 259 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 TP53TG5Q9Y2B4 290 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 KCNK5O95279 499 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 RAB4BP61018 213 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 PAPD4Q6PIY7 484 aaKnown RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 GSG1LQ6UXU4 331 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 VRK3Q8IV63 474 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 RTP4Q96DX8 246 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 SMOXQ9NWM0 555 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 CYB561P49447 251 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 C14orf28Q4W4Y0 310 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 FKRPQ9H9S5 495 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 MOV10Q9HCE1 1003 aaKnown RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 INTS6Q9UL03 887 aaKnown RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 HSPB11Q9Y547 144 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 PCDHGA7Q9Y5G6 932 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 A0A0U1RQK1 487 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 YES1P07947 543 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 MMP2P08253 660 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 PAPD5Q8NDF8 572 aaKnown RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 SYNPRQ8TBG9 265 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 DEFB127Q9H1M4 99 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 VAPAQ9P0L0 249 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 DKK3Q9UBP4 350 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 TLCD2A6NGC4 264 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 C2CD4DB7Z1M9 353 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 KLKB1P03952 638 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 DRD5P21918 477 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 SEMA3BQ13214 749 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 TAS2R3Q9NYW6 316 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 LOC105369274A0A096LPK9 316 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.6□□□□□ -0.71
TTC28-201ENST00000397906 TMEM11P17152 192 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 PCBD1P61457 104 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 PDE7AQ13946 482 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 DEFB109BQ30KR1 87 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 OR4N4Q8N0Y3 316 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 NUMA1Q14980 2115 aa10.6□□□□□ -0.71
TTC28-201ENST00000397906 SF3A2Q15428 464 aaKnown RBP10.59□□□□□ -0.71
TTC28-201ENST00000397906 TECPR1Q7Z6L1 1165 aa10.59□□□□□ -0.71
TTC28-201ENST00000397906 ARRDC2Q8TBH0 407 aa10.59□□□□□ -0.71
TTC28-201ENST00000397906 PATE1Q8WXA2 126 aa10.59□□□□□ -0.71
TTC28-201ENST00000397906 PITHD1Q9GZP4 211 aaPredicted RBP10.59□□□□□ -0.71
TTC28-201ENST00000397906 COQ3Q9NZJ6 369 aa10.59□□□□□ -0.71
TTC28-201ENST00000397906 SEMA6CQ9H3T2 930 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms