RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 PON3Q15166 354 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 ESPNLQ6ZVH7 1005 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 CHMP1BQ7LBR1 199 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 RETREG3Q86VR2 466 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 LILRA2Q8N149 483 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 OR10D3Q8NH80 312 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 CNOT9Q92600 299 aaKnown RBP13.81□□□□□ -0.2
VAPA-201ENST00000340541 TMEM19Q96HH6 336 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 FOXC2Q99958 501 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 SFXN3Q9BWM7 321 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 CXXC4Q9H2H0 198 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 IKZF5Q9H5V7 419 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 RNF122Q9H9V4 155 aa13.81□□□□□ -0.2
VAPA-201ENST00000340541 EXOSC3Q9NQT5 275 aaKnown RBP13.81□□□□□ -0.2
VAPA-201ENST00000340541 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.81□□□□□ -0.2
VAPA-201ENST00000340541 DNAJB12Q9NXW2 375 aaKnown RBP13.81□□□□□ -0.2
VAPA-201ENST00000340541 FOXD3Q9UJU5 478 aaPredicted RBP13.81□□□□□ -0.2
VAPA-201ENST00000340541 MTORP42345 2549 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 A0A1W2PNV4 684 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 AQP8O94778 261 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 DBIP07108 87 aaKnown RBP13.8□□□□□ -0.2
VAPA-201ENST00000340541 VIMP08670 466 aaKnown RBP13.8□□□□□ -0.2
VAPA-201ENST00000340541 TROVE2P10155 538 aaKnown RBP eCLIP13.8□□□□□ -0.2
VAPA-201ENST00000340541 EIF1AXP47813 144 aaKnown RBP13.8□□□□□ -0.2
VAPA-201ENST00000340541 SLC6A8P48029 635 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 CRISP3P54108 245 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 SESN3P58005 492 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 GUSBP1Q15486 140 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 RPS26P11Q5JNZ5 115 aaPredicted RBP13.8□□□□□ -0.2
VAPA-201ENST00000340541 CMIPQ8IY22 773 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 DPP10Q8N608 796 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 OR2V1Q8NHB1 315 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 ST8SIA1Q92185 356 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 MAL2Q969L2 176 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 KLHL15Q96M94 604 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 ZNF317Q96PQ6 595 aaPredicted RBP13.8□□□□□ -0.2
VAPA-201ENST00000340541 A4GALTQ9NPC4 353 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 THUMPD1Q9NXG2 353 aaKnown RBP13.8□□□□□ -0.2
VAPA-201ENST00000340541 STOML1Q9UBI4 398 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 ITPR3Q14573 2671 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 NF1P21359 2839 aa13.8□□□□□ -0.2
VAPA-201ENST00000340541 TNFSF11O14788 317 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 CXCL13O43927 109 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 CRHP06850 196 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 PGCP20142 388 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 ME2P23368 584 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 SFTPDP35247 375 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 KIR2DL2P43627 348 aaPredicted RBP13.79□□□□□ -0.2
VAPA-201ENST00000340541 KIR2DL3P43628 341 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 ARFIP2P53365 341 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 IST1P53990 364 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 SF3A3Q12874 501 aaKnown RBP eCLIP13.79□□□□□ -0.22e-20■■■■□ 20.6
VAPA-201ENST00000340541 OR2A2Q6IF42 318 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 P4HA3Q7Z4N8 544 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 VRK2Q86Y07 508 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 TSPEARQ8WU66 669 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 WDR60Q8WVS4 1066 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 RNASE6Q93091 150 aaKnown RBP13.79□□□□□ -0.2
VAPA-201ENST00000340541 CPPED1Q9BRF8 314 aaPredicted RBP13.79□□□□□ -0.2
VAPA-201ENST00000340541 TMUB1Q9BVT8 246 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 RSPO3Q9BXY4 272 aaPredicted RBP13.79□□□□□ -0.2
VAPA-201ENST00000340541 RAD21L1Q9H4I0 556 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 COQ10BQ9H8M1 238 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 BCL2L10Q9HD36 194 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 ACER3Q9NUN7 267 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 CALML5Q9NZT1 146 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 LEF1Q9UJU2 399 aaPredicted RBP13.79□□□□□ -0.2
VAPA-201ENST00000340541 NDUFAF1Q9Y375 327 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 CHST2Q9Y4C5 530 aa13.79□□□□□ -0.2
VAPA-201ENST00000340541 A0A0G2JPF8 293 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 CDHR4A6H8M9 788 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 HNRNPCL2B2RXH8 293 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 HNRNPCL3B7ZW38 293 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 AP3D1O14617 1153 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 HNRNPCL1O60812 293 aaKnown RBP13.78□□□□□ -0.2
VAPA-201ENST00000340541 HNRNPCL4P0DMR1 293 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 CD99P14209 185 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 IL7RP16871 459 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 GPX2P18283 190 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 RYKP34925 604 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 EEF1A1P68104 462 aaKnown RBP13.78□□□□□ -0.2
VAPA-201ENST00000340541 SELENBP1Q13228 472 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 SGCBQ16585 318 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 TMEM176BQ3YBM2 270 aaPredicted RBP13.78□□□□□ -0.2
VAPA-201ENST00000340541 RUNDC3AQ59EK9 446 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 MRPL2Q5T653 305 aaKnown RBP13.78□□□□□ -0.2
VAPA-201ENST00000340541 PRAMEF8Q5VWM4 474 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 PRAMEF7Q5VXH5 474 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 HBMQ6B0K9 141 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 VWA1Q6PCB0 445 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 ZNF836Q6ZNA1 936 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 PLEKHM3Q6ZWE6 761 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 LSRQ86X29 649 aaPredicted RBP13.78□□□□□ -0.2
VAPA-201ENST00000340541 OR52P1PQ8NH57 321 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 FAM222BQ8WU58 562 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 TMEM234Q8WY98 164 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 STARD4Q96DR4 205 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 CCDC106Q9BWC9 280 aa13.78□□□□□ -0.2
VAPA-201ENST00000340541 POLDIP3Q9BY77 421 aaKnown RBP13.78□□□□□ -0.2
VAPA-201ENST00000340541 SRXN1Q9BYN0 137 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms