RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CYBRD1Q53TN4 286 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 INTS11Q5TA45 600 aaKnown RBP11.49□□□□□ -0.57
PNKP-217ENST00000625216 VASNQ6EMK4 673 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 ZCCHC12Q6PEW1 402 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 EIF3MQ7L2H7 374 aaKnown RBP11.49□□□□□ -0.57
PNKP-217ENST00000625216 LILRA2Q8N149 483 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 METTL25Q8N6Q8 603 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 PAPD5Q8NDF8 572 aaKnown RBP11.49□□□□□ -0.57
PNKP-217ENST00000625216 BBS10Q8TAM1 723 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 PIK3R3Q92569 461 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 TMBIM1Q969X1 311 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 NODALQ96S42 347 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 STACQ99469 402 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 SEPHS2Q99611 448 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 TIMP4Q99727 224 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 RSPO3Q9BXY4 272 aaPredicted RBP11.49□□□□□ -0.57
PNKP-217ENST00000625216 SLC38A1Q9H2H9 487 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 PIGUQ9H490 435 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 DUSP22Q9NRW4 184 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 KLRF1Q9NZS2 232 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 TNFRSF10DQ9UBN6 386 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 RIMS3Q9UJD0 308 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 AURKCQ9UQB9 309 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 AP4S1Q9Y587 144 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 DSPPQ9NZW4 1301 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 DNAJC13O75165 2243 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 LRBAP50851 2863 aa11.49□□□□□ -0.57
PNKP-217ENST00000625216 PKDREJQ9NTG1 2253 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 ABCA12Q86UK0 2595 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 APCP25054 2843 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 TMEM247A6NEH6 219 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 PRAMEF25A6NGN4 478 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 TTC36A6NLP5 189 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 HSPB2A8KAH6 182 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 M0QX08 132 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 GNB5O14775 395 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 TPST1O60507 370 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 TSPAN2O60636 221 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 TIPRLO75663 272 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 H6PDO95479 791 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 ZNF682O95780 498 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 EPPINO95925 133 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 ACTL6AO96019 429 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 SEMG1P04279 462 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 IGFBP2P18065 325 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 CD247P20963 164 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 PTGDSP41222 190 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 CRISP3P54108 245 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 TFF3Q07654 80 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 CRYZQ08257 329 aaKnown RBP11.48□□□□□ -0.57
PNKP-217ENST00000625216 TOMM20Q15388 145 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 HSPB2Q16082 182 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 SNCBQ16143 134 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 SLC25A35Q3KQZ1 300 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 CYP27C1Q4G0S4 372 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 GPAT3Q53EU6 434 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 CCNJQ5T5M9 372 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 ATAD3BQ5T9A4 648 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 HMBOX1Q6NT76 420 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 MEX3BQ6ZN04 569 aaKnown RBP11.48□□□□□ -0.57
PNKP-217ENST00000625216 FRRS1Q6ZNA5 592 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 C16orf62Q7Z3J2 963 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 VTCN1Q7Z7D3 282 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 HMGN2P46Q86SG4 172 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 PATL1Q86TB9 770 aaKnown RBP11.48□□□□□ -0.57
PNKP-217ENST00000625216 LURAP1LQ8IV03 231 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 ZNF295-AS1Q8N0V1 137 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 PQLC1Q8N2U9 271 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 COX18Q8N8Q8 333 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 CHDHQ8NE62 594 aaPredicted RBP11.48□□□□□ -0.57
PNKP-217ENST00000625216 SLC47A1Q96FL8 570 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 HSH2DQ96JZ2 352 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 RNF145Q96MT1 663 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 ADOQ96SZ5 270 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 PKP2Q99959 881 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 UCK2Q9BZX2 261 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 PRDM14Q9GZV8 571 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 BCL2L10Q9HD36 194 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 EXD2Q9NVH0 621 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 ARMC1Q9NVT9 282 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 RPS6KA6Q9UK32 745 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 SAMD4AQ9UPU9 718 aaKnown RBP11.48□□□□□ -0.57
PNKP-217ENST00000625216 GPC6Q9Y625 555 aaPredicted RBP11.48□□□□□ -0.57
PNKP-217ENST00000625216 NINQ8N4C6 2090 aa11.48□□□□□ -0.57
PNKP-217ENST00000625216 A0A0G2JNJ9 132 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 DUXAA6NLW8 204 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 FAM90A27PA6NNH2 459 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 MFN2O95140 757 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 BAG2O95816 211 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 AGR2O95994 175 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 TNFRSF1BP20333 461 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 MSX1P28360 303 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 IL12BP29460 328 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 GABRA3P34903 492 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 TIMP3P35625 211 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 SESN3P58005 492 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 POU6F2P78424 691 aaPredicted RBP11.47□□□□□ -0.57
PNKP-217ENST00000625216 CHRNEQ04844 493 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 SLC34A1Q06495 639 aa11.47□□□□□ -0.57
PNKP-217ENST00000625216 ZNHIT3Q15649 155 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms