RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C1orf226A1L170 272 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 WNT11O96014 354 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 CRYBA1P05813 215 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 ZNF460Q14592 562 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 SPA17Q15506 151 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 KCTD19Q17RG1 926 aaPredicted RBP13.89□□□□□ -0.19
VPS53-218ENST00000575207 TMEM176BQ3YBM2 270 aaPredicted RBP13.89□□□□□ -0.19
VPS53-218ENST00000575207 LRRC70Q7Z2Q7 622 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 CDK20Q8IZL9 346 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 ZFP90Q8TF47 636 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 ANKRD49Q8WVL7 239 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 SGCDQ92629 289 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 YIPF5Q969M3 257 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 KLHL29Q96CT2 875 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 ZNF681Q96N22 645 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 SLC38A2Q96QD8 506 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 DCTN4Q9UJW0 460 aa13.89□□□□□ -0.19
VPS53-218ENST00000575207 PPIAL4EA0A075B759 164 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 PPIAL4CA0A0B4J2A2 164 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 PPIAL4DF5H284 164 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 DHHO43323 396 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 RP2O75695 350 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 TPM3P06753 285 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 LINGO3P0C6S8 592 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 PPIAL4FP0DN26 164 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 GPC1P35052 558 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 THBS4P35443 961 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 GP5P40197 560 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 EIF1P41567 113 aaKnown RBP13.88□□□□□ -0.19
VPS53-218ENST00000575207 MTNR1AP48039 350 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 CRYMQ14894 314 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 DECR1Q16698 335 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 FAM180BQ6P0A1 224 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 GALNT18Q6P9A2 607 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 IKBIPQ70UQ0 350 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 MYLK4Q86YV6 388 aaPredicted RBP13.88□□□□□ -0.19
VPS53-218ENST00000575207 CNRIP1Q96F85 164 aaPredicted RBP13.88□□□□□ -0.19
VPS53-218ENST00000575207 ANKRD27Q96NW4 1050 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 ZNF416Q9BWM5 594 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 PCDHGA11Q9Y5H2 935 aa13.88□□□□□ -0.19
VPS53-218ENST00000575207 IGKV3D-15A0A087WSY6 115 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 CXorf49A8MYA2 514 aaPredicted RBP13.87□□□□□ -0.19
VPS53-218ENST00000575207 ERLIN1O75477 346 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 ATP4BP51164 291 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 NAAAQ02083 359 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 CCNG2Q16589 344 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 SEL1L2Q5TEA6 688 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 C9orf139Q6ZV77 190 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 ADGRG3Q86Y34 549 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 DEFB108BQ8NET1 73 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 KLHDC3Q9BQ90 382 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 CD244Q9BZW8 370 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 CD274Q9NZQ7 290 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 PSME2Q9UL46 239 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 ZNF780BQ9Y6R6 833 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 DNAH7Q8WXX0 4024 aa13.87□□□□□ -0.19
VPS53-218ENST00000575207 ALG1L2C9J202 215 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 PIP5K1CO60331 668 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 UTS2O95399 124 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 IGHV2-5P01817 119 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 KLK1P06870 262 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 FAM157BP0CG42 384 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 NTF4P34130 210 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 MAGEA3P43357 314 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 HGFACQ04756 655 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 ZNF155Q12901 538 aaPredicted RBP13.86□□□□□ -0.19
VPS53-218ENST00000575207 PDK3Q15120 406 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 OXLD1Q5BKU9 147 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 DRICH1Q6PGQ1 229 aaPredicted RBP13.86□□□□□ -0.19
VPS53-218ENST00000575207 PDPRQ8NCN5 879 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 OR52E4Q8NGH9 312 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 LINC01006Q8NI28 216 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 BOD1Q96IK1 185 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 SIGLEC10Q96LC7 697 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 SLC30A2Q9BRI3 323 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 MS4A7Q9GZW8 240 aaPredicted RBP13.86□□□□□ -0.19
VPS53-218ENST00000575207 OXSMQ9NWU1 459 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 TAS2R9Q9NYW1 312 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 EMC3Q9P0I2 261 aa13.86□□□□□ -0.19
VPS53-218ENST00000575207 NOSIPQ9Y314 301 aaKnown RBP13.86□□□□□ -0.19
VPS53-218ENST00000575207 STAB2Q8WWQ8 2551 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 KIF2AO00139 706 aaPredicted RBP13.85□□□□□ -0.19
VPS53-218ENST00000575207 ZNF195O14628 629 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 PIP5K1BO14986 540 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 PLOD3O60568 738 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 GUCY1B2O75343 617 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 SEMA3DO95025 777 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 GPANK1O95872 356 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 GSNP06396 782 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 PGAM1P18669 254 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 CALCRP30988 508 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 PSMD4P55036 377 aaKnown RBP13.85□□□□□ -0.19
VPS53-218ENST00000575207 TGFBR3Q03167 851 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 SLC18A2Q05940 514 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 FOXF1Q12946 379 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 TRIP13Q15645 432 aaPredicted RBP13.85□□□□□ -0.19
VPS53-218ENST00000575207 CCNYL2Q5T2Q4 361 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 REP15Q6BDI9 236 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 ANKRD16Q6P6B7 361 aa13.85□□□□□ -0.19
VPS53-218ENST00000575207 WDFY1Q8IWB7 410 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms