RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PCDH17O14917 1159 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 APOA1P02647 267 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 ID4P47928 161 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 HNRNPFP52597 415 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 CCNIQ14094 377 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 MAPK11Q15759 364 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 COL28A1Q2UY09 1125 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 RNASE12Q5GAN4 147 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 LCN1P1Q5VSP4 162 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 GTF2IRD2BQ6EKJ0 949 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 VHLLQ6RSH7 139 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 TBPL2Q6SJ96 375 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 GTF2IRD2Q86UP8 949 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 GALNT16Q8N428 558 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 UXS1Q8NBZ7 420 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 MUS81Q96NY9 551 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 C1QTNF6Q9BXI9 259 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 FAM117AQ9C073 453 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 OR11A1Q9GZK7 315 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 PAIP1Q9H074 479 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 CKLFQ9UBR5 152 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 RPL36Q9Y3U8 105 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 ICOSLGO75144 302 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 MRPL33O75394 65 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 CDK4P11802 303 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 MYL9P24844 172 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 PSMA1P25786 263 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 PPICP45877 212 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SLC15A1P46059 708 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SH3BGRP55822 239 aaPredicted RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 PPIAP62937 165 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 SLC10A1Q14973 349 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 CRTC2Q53ET0 693 aaPredicted RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 ACER2Q5QJU3 275 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 C19orf48Q6RUI8 117 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 HACD2Q6Y1H2 254 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 B3GLCTQ6Y288 498 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 D2HGDHQ8N465 521 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 BOLLQ8N9W6 283 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 SDR9C7Q8NEX9 313 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 LRR1Q96L50 414 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 IKZF5Q9H5V7 419 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 DCAF13Q9NV06 445 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 ARMC1Q9NVT9 282 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 TMEM181Q9P2C4 612 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 KLHL13Q9P2N7 655 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 AASSQ9UDR5 926 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 NTNG1Q9Y2I2 539 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 MRPS18BQ9Y676 258 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 A0A1B0GWA3 101 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 A0A1W2PPV9 198 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 A6NLC8 198 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 H7C1C5 153 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 ETS2P15036 469 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 PEBP1P30086 187 aaKnown RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 ACVR1BP36896 505 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 STARP49675 285 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 ALDH3A2P51648 485 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 LCN6P62502 163 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 CAMK2DQ13557 499 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 AGERQ15109 404 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 WBP2NLQ6ICG8 309 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 CHST4Q8NCG5 386 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 OR11G2Q8NGC1 345 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 SCNM1Q9BWG6 230 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 CCNB1IP1Q9NPC3 277 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 RPRD1BQ9NQG5 326 aaKnown RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 ABCG2Q9UNQ0 655 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 ASB4Q9Y574 426 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 WNK2Q9Y3S1 2297 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 ZNF646O15015 1829 aaPredicted RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 ZNF891A8MT65 544 aaPredicted RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 SHISA8B8ZZ34 492 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 F5H5K5 113 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 SUSD5O60279 629 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 DNAJB6O75190 326 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 FCER2P06734 321 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 GGT2P36268 569 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 SOX3P41225 446 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 AGFG1P52594 562 aaKnown RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 SLC26A5P58743 744 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 PIGFQ07326 219 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 ATG14Q6ZNE5 492 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 CXXC5Q7LFL8 322 aaKnown RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 BCORP1Q8N888 145 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 OR4C3Q8NH37 302 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 COQ7Q99807 217 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 COMMD4Q9H0A8 199 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 FAM53CQ9NYF3 392 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 WDR81Q562E7 1941 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 PRRG2O14669 202 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 KCNK2O95069 426 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 NDUFB2O95178 105 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 PNMTP11086 282 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 EIF2S3P41091 472 aaKnown RBP8.53□□□□□ -1.04
VPS39-205ENST00000562258 CARD18P57730 90 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS39-205ENST00000562258 SLC14A1Q13336 389 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 SQSTM1Q13501 440 aa8.53□□□□□ -1.04
VPS39-205ENST00000562258 PODNL1Q6PEZ8 512 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms