RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ABCD3P28288 659 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 SESN3P58005 492 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 COPZ1P61923 177 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 KCNJ10P78508 379 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 OC90Q02509 493 aaPredicted RBP10.76□□□□□ -0.69
LDLR-212ENST00000560467 ZNF141Q15928 474 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 MEP1AQ16819 746 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 RNFT1Q5M7Z0 435 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 AP1ARQ63HQ0 302 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 NPSR1Q6W5P4 371 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 ZNF550Q7Z398 422 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 GALNTL5Q7Z4T8 443 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.76□□□□□ -0.69
LDLR-212ENST00000560467 GALNT10Q86SR1 603 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 MISPQ8IVT2 679 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 GPALPP1Q8IXQ4 340 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 PQLC1Q8N2U9 271 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 ACBD4Q8NC06 268 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 PAPD5Q8NDF8 572 aaKnown RBP10.76□□□□□ -0.69
LDLR-212ENST00000560467 DTNBP1Q96EV8 351 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 CENPNQ96H22 339 aaPredicted RBP10.76□□□□□ -0.69
LDLR-212ENST00000560467 CDCP1Q9H5V8 836 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 REEP1Q9H902 201 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 MCCC2Q9HCC0 563 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 DNAJB9Q9UBS3 223 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 PRDM4Q9UKN5 801 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 ZNF443Q9Y2A4 671 aaPredicted RBP10.76□□□□□ -0.69
LDLR-212ENST00000560467 PCDHGB6Q9Y5F9 930 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 DSPPQ9NZW4 1301 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 CACNA1CQ13936 2221 aa10.76□□□□□ -0.69
LDLR-212ENST00000560467 CPAMD8Q8IZJ3 1885 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 MED13LQ71F56 2210 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 PRAMEF27A3QJZ7 478 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 SERINC4A6NH21 518 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 ADAMDEC1O15204 470 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 NDUFB5O43674 189 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 ITGA10O75578 1167 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 TIPRLO75663 272 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 CYP7B1O75881 506 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 NEURL1O76050 574 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 CSTAP01040 98 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 NGFRP08138 427 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 RHCEP18577 417 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 CD247P20963 164 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 RGS8P57771 180 aaPredicted RBP10.75□□□□□ -0.69
LDLR-212ENST00000560467 GK3PQ14409 553 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 DUSP7Q16829 419 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 PDZK1Q5T2W1 519 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 ZNF468Q5VIY5 522 aaPredicted RBP10.75□□□□□ -0.69
LDLR-212ENST00000560467 RNF220Q5VTB9 566 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 FBXW10Q5XX13 1052 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 VTCN1Q7Z7D3 282 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 DOLPP1Q86YN1 238 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 PRR22Q8IZ63 422 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 ZNF441Q8N8Z8 693 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 PIK3C3Q8NEB9 887 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 OR10Q1Q8NGQ4 319 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 VANGL1Q8TAA9 524 aaPredicted RBP10.75□□□□□ -0.69
LDLR-212ENST00000560467 SLC35B4Q969S0 331 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 EME1Q96AY2 570 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 SGCZQ96LD1 299 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 DMRTA2Q96SC8 542 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 FNDC11Q9BVV2 318 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 ENKD1Q9H0I2 346 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 METTL7AQ9H8H3 244 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 LIN28AQ9H9Z2 209 aaKnown RBP10.75□□□□□ -0.69
LDLR-212ENST00000560467 TMEM27Q9HBJ8 222 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 C8orf4Q9NR00 106 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 HPF1Q9NWY4 346 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 RPS6KB2Q9UBS0 482 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 TMCC3Q9ULS5 477 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 ABCG2Q9UNQ0 655 aa10.75□□□□□ -0.69
LDLR-212ENST00000560467 NCOA6Q14686 2063 aaPredicted RBP10.75□□□□□ -0.69
LDLR-212ENST00000560467 FAM47E-STBD1D6RA91 191 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 E9PLN8 166 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 hCG_2039718K7EN88 272 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 GCM2O75603 506 aaPredicted RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 SLC25A12O75746 678 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 UGT2B17O75795 530 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 LGI1O95970 557 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 SP1P08047 785 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 FBXO45P0C2W1 286 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 ZNF24P17028 368 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 RRM2P31350 389 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 OR1E2P47887 323 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 SLC6A8P48029 635 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 TAS2R41P59536 307 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 FUT5Q11128 374 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 TRIP10Q15642 601 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 MAPK11Q15759 364 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 ATP6AP1Q15904 470 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 KLHL26Q53HC5 615 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 OR2T5Q6IEZ7 315 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 DEF8Q6ZN54 512 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 RRM2BQ7LG56 351 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 PIWIL3Q7Z3Z3 882 aaKnown RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 CARM1Q86X55 608 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 VRK2Q86Y07 508 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 ZDHHC13Q8IUH4 622 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 GHDCQ8N2G8 530 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms