RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 RNF215Q9Y6U7 377 aa12.71□□□□□ -0.38
RTN3-210ENST00000540798 CD1CP29017 333 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 S100A5P33763 92 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 CD79BP40259 229 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 ATP12AP54707 1039 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 SERTAD2Q14140 314 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 CCDC85BQ15834 202 aaPredicted RBP12.7□□□□□ -0.38
RTN3-210ENST00000540798 TRIM16LQ309B1 348 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 PERM1Q5SV97 790 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 NIPAL3Q6P499 406 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 SMARCD3Q6STE5 483 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 PLEKHG7Q6ZR37 379 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 QSOX2Q6ZRP7 698 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 LSRQ86X29 649 aaPredicted RBP12.7□□□□□ -0.38
RTN3-210ENST00000540798 CPOQ8IVL8 374 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 SLC43A2Q8N370 569 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 OR4F15Q8NGB8 312 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 OR52L1Q8NGH7 329 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 OR52N1Q8NH53 320 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 Q9N2J8 555 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 CMC2Q9NRP2 79 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 SEMA5BQ9P283 1151 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 SPIN1Q9Y657 262 aaPredicted RBP12.7□□□□□ -0.38
RTN3-210ENST00000540798 SOCS6O14544 535 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 NGFRP08138 427 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 GAAP10253 952 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 BCAP31P51572 246 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 GRM7Q14831 915 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 THSD4Q6ZMP0 1018 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 SHFQ7M4L6 423 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 LAPTM4BQ86VI4 370 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 LYSMD2Q8IV50 215 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 BCORP1Q8N888 145 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 PSD4Q8NDX1 1056 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 OIT3Q8WWZ8 545 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 GATAD2BQ8WXI9 593 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 KISS1RQ969F8 398 aaPredicted RBP12.7□□□□□ -0.38
RTN3-210ENST00000540798 CLDN23Q96B33 292 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 SHDQ96IW2 340 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 MED18Q9BUE0 208 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 SOHLH2Q9NX45 425 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 ERVK13-1Q9NX77 482 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 ERVK-19Q9WJR5 959 aa12.7□□□□□ -0.38
RTN3-210ENST00000540798 OR2W5A6NFC9 320 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 IL1AP01583 271 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 GABRA5P31644 462 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 SF3B4Q15427 424 aaKnown RBP eCLIP12.69□□□□□ -0.38
RTN3-210ENST00000540798 ARMC4Q5T2S8 1044 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 ZNF550Q7Z398 422 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 BMP8AQ7Z5Y6 402 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 CDK20Q8IZL9 346 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 OR7G1Q8NGA0 311 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 OR13C2Q8NGS9 318 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 PTCHD1Q96NR3 888 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 MIR1-1HGQ9H1L0 117 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 CAPN10Q9HC96 672 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 KLHL3Q9UH77 587 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 FGF9P31371 208 aaPredicted RBP12.69□□□□□ -0.38
RTN3-210ENST00000540798 NKAIN2Q5VXU1 208 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 MEPCEQ7L2J0 689 aaKnown RBP12.69□□□□□ -0.38
RTN3-210ENST00000540798 SIRT6Q8N6T7 355 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 UFD1Q92890 307 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 SMURF1Q9HCE7 757 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 EXOSC4Q9NPD3 245 aaKnown RBP12.69□□□□□ -0.38
RTN3-210ENST00000540798 CRNNQ9UBG3 495 aaPredicted RBP12.69□□□□□ -0.38
RTN3-210ENST00000540798 USP34Q70CQ2 3546 aa12.69□□□□□ -0.38
RTN3-210ENST00000540798 IQCMA0A1B0GVH7 501 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 SLC35F4A4IF30 521 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 EFCAB7A8K855 629 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 HCN1O60741 890 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 SNX4O95219 450 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 LALBAP00709 142 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 TSPAN19P0C672 248 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 MSL3P1P0C860 447 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 BMP7P18075 431 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 RORCP51449 518 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 RPS25P62851 125 aaKnown RBP12.68□□□□□ -0.38
RTN3-210ENST00000540798 FOXK2Q01167 660 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 Q8N9G6 341 aaPredicted RBP12.68□□□□□ -0.38
RTN3-210ENST00000540798 GALNT6Q8NCL4 622 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 FAM71CQ8NEG0 241 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 GRHL3Q8TE85 626 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 HLA-CQ95604 372 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 SLC25A46Q96AG3 418 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 WDFY2Q96P53 400 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 NUAK2Q9H093 628 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 BAIAP2Q9UQB8 552 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 MMACHCQ9Y4U1 282 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 SPTBP11277 2137 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 IGKV3D-11A0A0A0MRZ8 115 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 CCDC182A6NF36 153 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 PLD2O14939 933 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 BCKDHBP21953 392 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 CFHR1Q03591 330 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 FNDC7Q5VTL7 733 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 PTCRAQ6ISU1 281 aaPredicted RBP12.68□□□□□ -0.38
RTN3-210ENST00000540798 ULK3Q6PHR2 472 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 BPHLQ86WA6 291 aaPredicted RBP12.68□□□□□ -0.38
RTN3-210ENST00000540798 METTL27Q8N6F8 245 aaPredicted RBP12.68□□□□□ -0.38
RTN3-210ENST00000540798 PTPMT1Q8WUK0 201 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms