RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NKX2-6A6NCS4 301 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 HNRNPCL2B2RXH8 293 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 HNRNPCL3B7ZW38 293 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 HNRNPCL1O60812 293 aaKnown RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 IL2RAP01589 272 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 BCHEP06276 602 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 UBTFL6P0CB48 400 aaPredicted RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 HNRNPCL4P0DMR1 293 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 PPIBP23284 216 aaKnown RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 ELK4P28324 431 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 CRISP3P54108 245 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 EEFSECP57772 596 aaKnown RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 FOXF2Q12947 444 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 KLF10Q13118 480 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 CBFBQ13951 182 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 QPRTQ15274 297 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 SLC25A35Q3KQZ1 300 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 PRAMEF8Q5VWM4 474 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 PRAMEF7Q5VXH5 474 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 HMGN2P46Q86SG4 172 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 UBQLNLQ8IYU4 475 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 MEIOBQ8N635 442 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 RELL2Q8NC24 303 aaPredicted RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 FBXO27Q8NI29 283 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 ST8SIA1Q92185 356 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 FIG4Q92562 907 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 CNOT9Q92600 299 aaKnown RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 MAL2Q969L2 176 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 ZFP3Q96NJ6 502 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 TM9SF2Q99805 663 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 CPPED1Q9BRF8 314 aaPredicted RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 RAD21L1Q9H4I0 556 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 KCNJ16Q9NPI9 418 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 MRGBPQ9NV56 204 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 DNAJB12Q9NXW2 375 aaKnown RBP11.67□□□□□ -0.54
VPS28-216ENST00000533806 CALML5Q9NZT1 146 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 JKAMPQ9P055 326 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 ZNF175Q9Y473 711 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 CHST2Q9Y4C5 530 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 KIAA1549Q9HCM3 1950 aa11.67□□□□□ -0.54
VPS28-216ENST00000533806 LRBAP50851 2863 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 A0A0J9YW62 118 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 CDHR4A6H8M9 788 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 DYNC1I1O14576 645 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 TNFSF13O75888 250 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 PGM3O95394 542 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 IL18BPO95998 194 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 DBIP07108 87 aaKnown RBP11.66□□□□□ -0.54
VPS28-216ENST00000533806 CTSSP25774 331 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 SHC1P29353 583 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 ADSLP30566 484 aaPredicted RBP11.66□□□□□ -0.54
VPS28-216ENST00000533806 SESN3P58005 492 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 EEF1A1P68104 462 aaKnown RBP11.66□□□□□ -0.54
VPS28-216ENST00000533806 HPCAP84074 193 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 SF3A3Q12874 501 aaKnown RBP eCLIP11.66□□□□□ -0.543e-6■■■■□ 25.6
VPS28-216ENST00000533806 GUSBP1Q15486 140 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 FBXL19-AS1Q494R0 122 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 GRAMD2AQ8IUY3 354 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 LILRA2Q8N149 483 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 ZNF845Q96IR2 970 aaPredicted RBP11.66□□□□□ -0.54
VPS28-216ENST00000533806 ANKRD27Q96NW4 1050 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 CGREF1Q99674 301 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 SPOCK3Q9BQ16 436 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 TMEM38AQ9H6F2 299 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 RNF122Q9H9V4 155 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 ACER3Q9NUN7 267 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 PRDM4Q9UKN5 801 aa11.66□□□□□ -0.54
VPS28-216ENST00000533806 SLC22A20A6NK97 555 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 FAM90A27PA6NNH2 459 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 FXYD1O00168 92 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 SYT5O00445 386 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 FAAHO00519 579 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 SEC14L5O43304 696 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 NUDT14O95848 222 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 OPN1LWP04000 364 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 THBS1P07996 1170 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 TMIGD3P0DMS9 266 aaPredicted RBP11.65□□□□□ -0.54
VPS28-216ENST00000533806 ARAFP10398 606 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 PGCP20142 388 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 ACAA2P42765 397 aaKnown RBP11.65□□□□□ -0.54
VPS28-216ENST00000533806 SEC24CP53992 1094 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 GNA13Q14344 377 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 COQ5Q5HYK3 327 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 RPS26P11Q5JNZ5 115 aaPredicted RBP11.65□□□□□ -0.54
VPS28-216ENST00000533806 MRPL2Q5T653 305 aaKnown RBP11.65□□□□□ -0.54
VPS28-216ENST00000533806 RNF220Q5VTB9 566 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 ESPNLQ6ZVH7 1005 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 DHDDSQ86SQ9 333 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 VRK2Q86Y07 508 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 PEX5LQ8IYB4 626 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 TMCO5AQ8N6Q1 288 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 OR52P1PQ8NH57 321 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 OR10D3Q8NH80 312 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 OR2V1Q8NHB1 315 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 FNDC9Q8TBE3 224 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 WDR60Q8WVS4 1066 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 CCDC106Q9BWC9 280 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 PINK1Q9BXM7 581 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 RLIMQ9NVW2 624 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms