RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ITPA	Q9BY32	194 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	PKIB	Q9C010	78 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SLITRK2	Q9H156	845 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	HEXA-AS1	Q9H8Q6	139 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	WDR41	Q9HAD4	459 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	C3orf14	Q9HBI5	128 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	CHST11	Q9NPF2	352 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	FZD3	Q9NPG1	666 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	FAM207A	Q9NSI2	230 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	TMEM248	Q9NWD8	314 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	MTMR10	Q9NXD2	777 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SMPX	Q9UHP9	88 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	UTS2R	Q9UKP6	389 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	ADAM28	Q9UKQ2	775 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	TSPAN16	Q9UKR8	245 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	SCML1	Q9UN30	329 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	MOK	Q9UQ07	419 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-231	ENST00000531110	MTCH2	Q9Y6C9	303 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	TULP4	Q9NRJ4	1543 aa		5.18	□□□□□ -1.58
CD44-231	ENST00000531110	DDX60	Q8IY21	1712 aa	Known RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	PIK3C2B	O00750	1634 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110		A8MUA0	341 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	PTGES3L	E9PB15	166 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110		F8VP50	259 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	NPIPB9	F8W1W9	429 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110		M0QZ92	97 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	NR5A2	O00482	541 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	BHLHE40	O14503	412 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	CCS	O14618	274 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	MSH4	O15457	936 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	CHST10	O43529	356 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	TLX2	O43763	284 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	GLRA3	O75311	464 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	LRCH4	O75427	683 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ZMPSTE24	O75844	475 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	SC5D	O75845	299 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	SNAI1	O95863	264 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	GLUD1	P00367	558 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	IGHV2-5	P01817	119 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	C9	P02748	559 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ALPL	P05186	524 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	CSF3	P09919	207 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	NR2C1	P13056	603 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ACP5	P13686	325 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	HOXB6	P17509	224 aa	Known RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	RAB3B	P20337	219 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	PRKCH	P24723	683 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ACADL	P28330	430 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	SDC4	P31431	198 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	RYK	P34925	604 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	TAGLN2	P37802	199 aa	Known RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	GRIA1	P42261	906 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	PTGER3	P43115	390 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	PITPNB	P48739	271 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	BTG1	P62324	171 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	TRA2B	P62995	288 aa	Known RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	DLK1	P80370	383 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	TFAM	Q00059	246 aa	Known RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	TLE4	Q04727	773 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	EMX2	Q04743	252 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	GABPA	Q06546	454 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	RPA4	Q13156	261 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	IL18R1	Q13478	541 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	AQP6	Q13520	282 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	GANAB	Q14697	944 aa	Known RBP	5.17	□□□□□ -1.58
CD44-231	ENST00000531110	GUK1	Q16774	197 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	VPS26B	Q4G0F5	336 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	NHLRC3	Q5JS37	347 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	C1orf141	Q5JVX7	400 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	EPHA10	Q5JZY3	1008 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ASPHD1	Q5U4P2	390 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	KCTD11	Q693B1	232 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	XAF1	Q6GPH4	301 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	LRRC8E	Q6NSJ5	796 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	MTFR2	Q6P444	385 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ZCCHC12	Q6PEW1	402 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	RHBDF2	Q6PJF5	856 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	BTNL3	Q6UXE8	466 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	BAIAP2L2	Q6UXY1	529 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	GDPD4	Q6W3E5	623 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	SCARA5	Q6ZMJ2	495 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	FAM183BP	Q6ZVS7	135 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	VASH2	Q86V25	355 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	TGIF2LX	Q8IUE1	241 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	CFAP206	Q8IYR0	622 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	SVBP	Q8N300	66 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	MTURN	Q8N3F0	131 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	GPR137C	Q8N3F9	429 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	PRSS35	Q8N3Z0	413 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	LRRC57	Q8N9N7	239 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	AQP11	Q8NBQ7	271 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	ZNF248	Q8NDW4	579 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	DUSP18	Q8NEJ0	188 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	OR5D18	Q8NGL1	313 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	OR5R1	Q8NH85	324 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	FBXO25	Q8TCJ0	367 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	NEK7	Q8TDX7	302 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	HTRA1	Q92743	480 aa		5.17	□□□□□ -1.58
CD44-231	ENST00000531110	KAT2A	Q92830	837 aa		5.17	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms