RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 KRT35Q92764 455 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 MRPL24Q96A35 216 aaKnown RBP3.13□□□□□ -1.91
CD44-219ENST00000525685 C16orf58Q96GQ5 468 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 C5orf30Q96GV9 206 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 MSANTD3Q96H12 275 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 SSX3Q99909 188 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 AGPAT1Q99943 283 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 NUP58Q9BVL2 599 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 OCR1Q9BZK8 76 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 LINC00597Q9H2U6 94 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 HAUS4Q9H6D7 363 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 ECT2Q9H8V3 914 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 POPDC2Q9HBU9 364 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 TRPV5Q9NQA5 729 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 GDF3Q9NR23 364 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 ABCC13Q9NSE7 274 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 DUS2Q9NX74 493 aaKnown RBP3.13□□□□□ -1.91
CD44-219ENST00000525685 THYN1Q9P016 225 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 LSM7Q9UK45 103 aaKnown RBP3.13□□□□□ -1.91
CD44-219ENST00000525685 TMCC3Q9ULS5 477 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 MTF2Q9Y483 593 aaPredicted RBP3.13□□□□□ -1.91
CD44-219ENST00000525685 MIA3Q5JRA6 1907 aa3.13□□□□□ -1.91
CD44-219ENST00000525685 SYNJ2BP-COX16A0A087WUM0 186 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 ATP6AP2A0A1C7CYW4 349 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 EPM2AB3EWF7 344 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 SHISA9B4DS77 424 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 SLC9A3R1O14745 358 aaPredicted RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 PI15O43692 258 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 GOSR1O95249 250 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 CALB1P05937 261 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 SFTPBP07988 381 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 CCDC159P0C7I6 412 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 HNRNPH3P31942 346 aaKnown RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 OPRD1P41143 372 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 MAGEA8P43361 318 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 CCR4P51679 360 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 SGSHP51688 502 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 KDSRQ06136 332 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 GFPT1Q06210 699 aaPredicted RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 KLHL30Q0D2K2 578 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 COX10Q12887 443 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 NPRL3Q12980 569 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 RPA4Q13156 261 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 TMED1Q13445 227 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 EIF4EBP2Q13542 120 aaPredicted RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 PON2Q15165 354 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 TMEM44Q2T9K0 475 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 HIGD2BQ4VC39 106 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 SPECC1LQ69YQ0 1117 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 RTL6Q6ICC9 239 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 NEPROQ6NW34 567 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 DNAJC24Q6P3W2 148 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 WDR59Q6PJI9 974 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 TMUB2Q71RG4 321 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 BNIPLQ7Z465 357 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 RALGPS2Q86X27 583 aaPredicted RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 ERICH1Q86X53 443 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 MCOLN2Q8IZK6 566 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 LYG1Q8N1E2 194 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 FBXW8Q8N3Y1 598 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 OR1B1Q8NGR6 318 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 JOSD2Q8TAC2 188 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 FAM3CQ92520 227 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 OTUB2Q96DC9 234 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 RBM18Q96H35 190 aaKnown RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 SERPINB11Q96P15 392 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 RCHY1Q96PM5 261 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 NPY6RQ99463 290 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 P2RY13Q9BPV8 354 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 NTMT1Q9BV86 223 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 TRIM62Q9BVG3 475 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 WWP1Q9H0M0 922 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 ADNPQ9H2P0 1102 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 MFSD1Q9H3U5 465 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 LIME1Q9H400 295 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 C8orf33Q9H7E9 229 aaPredicted RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 DCLRE1BQ9H816 532 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.12□□□□□ -1.91
CD44-219ENST00000525685 AIPL1Q9NZN9 384 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 ADAM22Q9P0K1 906 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 COX16Q9P0S2 106 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 XPO7Q9UIA9 1087 aaKnown RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 STOML2Q9UJZ1 356 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 RARRES3Q9UL19 164 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 STAP1Q9ULZ2 295 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 NDRG2Q9UN36 371 aaKnown RBP3.12□□□□□ -1.91
CD44-219ENST00000525685 TECTAO75443 2155 aa3.12□□□□□ -1.91
CD44-219ENST00000525685 XIRP2A4UGR9 3374 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 A0A087X0T9 212 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 TEX48A0A1B0GUV7 120 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 GOLGA6L7A0A1B0GV03 622 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 ERICH4A6NGS2 130 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 SERINC4A6NH21 518 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 SIGLEC16A6NMB1 481 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 EEF2KO00418 725 aaKnown RBP3.11□□□□□ -1.91
CD44-219ENST00000525685 TRDMT1O14717 391 aaKnown RBP3.11□□□□□ -1.91
CD44-219ENST00000525685 CACNG3O60359 315 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 GALR3O60755 368 aaPredicted RBP3.11□□□□□ -1.91
CD44-219ENST00000525685 ADCY5O95622 1261 aa3.11□□□□□ -1.91
CD44-219ENST00000525685 CPNE6O95741 557 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms